#include <Ioexnl_DatabaseIO.h>

Inheritance diagram for Ioexnl::DatabaseIO:

Collaboration diagram for Ioexnl::DatabaseIO:

Public Member Functions
	DatabaseIO (Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props)

IOSS_NODISCARD int	get_file_pointer () const override

Public Member Functions inherited from Ioexnl::BaseDatabaseIO
	BaseDatabaseIO (Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props)

IOSS_NODISCARD std::string	get_format () const override

IOSS_NODISCARD unsigned	entity_field_support () const override

Public Member Functions inherited from Ioss::DatabaseIO
	DatabaseIO ()=delete

	DatabaseIO (const DatabaseIO &)=delete

	DatabaseIO (DatabaseIO &&)=delete

DatabaseIO &	operator= (const DatabaseIO &)=delete

DatabaseIO &	operator= (DatabaseIO &&)=delete

virtual	~DatabaseIO ()

IOSS_NODISCARD bool	ok (bool write_message=false, std::string error_message=nullptr, int bad_count=nullptr) const
	Check to see if database state is OK.

IOSS_NODISCARD bool	using_parallel_io () const

IOSS_NODISCARD int64_t	node_global_to_local (int64_t global, bool must_exist) const
	Get the local (process-specific) node number corresponding to a global node number.

IOSS_NODISCARD int64_t	element_global_to_local (int64_t global) const

virtual IOSS_NODISCARD bool	node_major () const

void	release_memory ()

virtual void	finalize_database () const

void	set_pfs_name (const std::string &name) const

IOSS_NODISCARD std::string	get_pfs_name () const

void	set_dw_name (const std::string &name) const
	this will be the name in BB namespace

IOSS_NODISCARD std::string	get_dw_name () const

IOSS_NODISCARD std::string	get_dw_path () const
	We call this ONLY after we assure that using_dw() is TRUE.

void	check_set_dw () const

IOSS_NODISCARD bool	using_dw () const

IOSS_NODISCARD std::string	get_filename () const
	Get the file name associated with the database.

IOSS_NODISCARD const std::string &	decoded_filename () const
	Get a file-per-processor filename associated with the database.

IOSS_NODISCARD bool	is_input () const
	Determine whether the database is an input database.

IOSS_NODISCARD Ioss::DatabaseUsage	usage () const
	Get the Ioss::DatabaseUsage type of the database.

virtual IOSS_NODISCARD bool	needs_shared_node_information () const
	Determine whether the database needs information about process ownership of nodes.

IOSS_NODISCARD Ioss::IfDatabaseExistsBehavior	open_create_behavior () const

void	set_region (Region *region)

void	open_dw (const std::string &filename) const
	If we are planning to use BB(aka Burst Buffer) service, we will call simple C API provided by Cray DataWarp module.

void	close_dw () const
	Function which invokes stageout from BB to Disk, prior to completion of final close.

void	openDatabase () const

void	closeDatabase () const

void	flush_database () const

void	reset_database ()

bool	open_internal_change_set (const std::string &set_name)
	If a database type supports internal change sets and if the database contains internal change sets, open the specified set.

bool	create_internal_change_set (const std::string &set_name)
	If a database type supports internal change sets, create the specified set.

int	num_internal_change_set ()
	If a database type supports internal change sets, and if the database contains internal change sets, return the number of change sets.

bool	open_internal_change_set (int set_index)
	If a database type supports internal change sets, open the change set specified [zero-based] index.

Ioss::NameList	internal_change_set_describe (bool return_full_names=false)
	If a database type supports internal change sets, return a list of set names.

bool	supports_internal_change_set ()
	Checks if a database type supports internal change sets.

virtual IOSS_NODISCARD std::string	get_internal_change_set_name () const

bool	begin (Ioss::State state)
	Set the database to the given State.

bool	end (Ioss::State state)
	Return the database to STATE_CLOSED.

bool	begin_state (int state, double time)

bool	end_state (int state, double time)

void	read_meta_data ()

void	get_step_times ()

std::vector< double >	get_db_step_times ()
	Return the list of timesteps in the database contingent on certain controlling properties.

virtual IOSS_NODISCARD bool	internal_edges_available () const

virtual IOSS_NODISCARD bool	internal_faces_available () const

IOSS_NODISCARD const Ioss::NameList &	get_information_records () const
	Get all information records (informative strings) for the database.

void	add_information_records (const Ioss::NameList &info)
	Add multiple information records (informative strings) to the database.

void	add_information_record (const std::string &info)
	Add an information record (an informative string) to the database.

IOSS_NODISCARD const Ioss::NameList &	get_qa_records () const
	Get all QA records, each of which consists of 4 strings, from the database.

void	add_qa_record (const std::string &code, const std::string &code_qa, const std::string &date, const std::string &time)
	Add a QA record, which consists of 4 strings, to the database.

IOSS_NODISCARD bool	get_logging () const

void	set_logging (bool on_off)

IOSS_NODISCARD bool	get_nan_detection () const

void	set_nan_detection (bool on_off)

template<typename T>
int64_t	get_field (const T reg, const Field &field, void data, size_t data_size) const

template<typename T>
int64_t	put_field (const T reg, const Field &field, void data, size_t data_size) const

template<typename T>
int64_t	get_zc_field (const T reg, const Field &field, void data, size_t data_size) const

IOSS_NODISCARD bool	is_parallel_consistent () const

void	set_parallel_consistency (bool on_off)

IOSS_NODISCARD bool	get_use_generic_canonical_name () const

void	set_use_generic_canonical_name (bool yes_no)

IOSS_NODISCARD bool	ignore_database_names () const

void	ignore_database_names (bool yes_no)

IOSS_NODISCARD bool	get_ignore_realn_fields () const

void	set_ignore_realn_fields (bool yes_no)

IOSS_NODISCARD std::string	get_component_name (const Ioss::Field &field, Ioss::Field::InOut in_out, int component) const

IOSS_NODISCARD char	get_field_separator () const

IOSS_NODISCARD bool	get_field_recognition () const

IOSS_NODISCARD bool	get_field_strip_trailing_ () const

void	set_field_separator (char separator)
	Set the character used to separate a field suffix from the field basename when recognizing vector, tensor fields.

void	set_field_recognition (bool yes_no)

void	set_field_strip_trailing_ (bool yes_no)

IOSS_NODISCARD DuplicateFieldBehavior	get_duplicate_field_behavior () const

void	set_lowercase_variable_names (bool true_false) const

void	set_lowercase_database_names (bool true_false) const

void	set_lower_case_variable_names (bool true_false) const

void	set_lower_case_database_names (bool true_false) const

void	set_surface_split_type (Ioss::SurfaceSplitType split_type)

IOSS_NODISCARD Ioss::SurfaceSplitType	get_surface_split_type () const

void	set_block_omissions (const Ioss::NameList &omissions, const Ioss::NameList &inclusions={})

void	set_assembly_omissions (const Ioss::NameList &omissions, const Ioss::NameList &inclusions={})

void	get_block_adjacencies (const Ioss::ElementBlock *eb, Ioss::NameList &block_adjacency) const

void	compute_block_membership (Ioss::SideBlock *efblock, Ioss::NameList &block_membership) const

IOSS_NODISCARD AxisAlignedBoundingBox	get_bounding_box (const Ioss::NodeBlock *nb) const

IOSS_NODISCARD AxisAlignedBoundingBox	get_bounding_box (const Ioss::ElementBlock *eb) const

IOSS_NODISCARD AxisAlignedBoundingBox	get_bounding_box (const Ioss::StructuredBlock *sb) const

IOSS_NODISCARD int	int_byte_size_api () const
	Returns 4 or 8.

IOSS_NODISCARD Ioss::DataSize	int_byte_size_data_size () const

IOSS_NODISCARD Region *	get_region () const

void	set_cycle_count (int count) const

IOSS_NODISCARD int	get_cycle_count () const

void	set_overlay_count (int count) const

IOSS_NODISCARD int	get_overlay_count () const

void	set_file_per_state (bool yes_no) const

IOSS_NODISCARD bool	get_file_per_state () const

void	set_time_scale_factor (double factor)

IOSS_NODISCARD const Ioss::ParallelUtils &	util () const

IOSS_NODISCARD const Ioss::PropertyManager &	get_property_manager () const

IOSS_NODISCARD int	parallel_rank () const
	Get the processor that this mesh database is on.

IOSS_NODISCARD int	parallel_size () const

IOSS_NODISCARD bool	is_parallel () const

void	progress (const std::string &output) const

virtual std::vector< size_t >	get_entity_field_data (const std::string &field_name, const std::vector< Ioss::ElementBlock * > &elem_blocks, void *data, size_t data_size) const

template<>
void	create_group (EntityType type, const std::string &, const Ioss::NameList &group_spec, const SideSet *)

Private Member Functions
void	get_step_times_nl () override

bool	handle_output_file (bool write_message, std::string error_msg, int bad_count, bool overwrite, bool abort_if_error) const override

bool	check_valid_file_ptr (bool write_message, std::string error_msg, int bad_count, bool abort_if_error) const

int64_t	put_field_internal (const Ioss::Region reg, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::Blob blob, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::Assembly assem, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::NodeBlock nb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::EdgeBlock eb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::FaceBlock eb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::ElementBlock eb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::SideBlock fb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::NodeSet ns, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::EdgeSet ns, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::FaceSet ns, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::ElementSet ns, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::SideSet ss, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::CommSet cs, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::StructuredBlock , const Ioss::Field &, void , size_t) const override

int64_t	put_Xset_field_internal (const Ioss::EntitySet ns, const Ioss::Field &field, void data, size_t data_size) const

int64_t	get_Xset_field_internal (const Ioss::EntitySet ns, const Ioss::Field &field, void data, size_t data_size) const

int64_t	read_nodal_coordinates ()

void	read_elements (const Ioss::ElementBlock &block)

void	compute_node_status () const

void	read_meta_data_nl () override

void	read_communication_metadata ()

int64_t	read_transient_field (const Ioexnl::VariableNameMap &variables, const Ioss::Field &field, const Ioss::GroupingEntity ge, void data) const

int64_t	read_attribute_field (const Ioss::Field &field, const Ioss::GroupingEntity ge, void data) const

int64_t	write_attribute_field (const Ioss::Field &field, const Ioss::GroupingEntity ge, void data) const

int64_t	read_ss_transient_field (const Ioss::Field &field, int64_t id, void *variables, std::vector< int > &is_valid_side) const

void	write_nodal_transient_field (const Ioss::Field &field, const Ioss::NodeBlock ge, int64_t count, void variables) const

void	write_entity_transient_field (const Ioss::Field &field, const Ioss::GroupingEntity ge, int64_t count, void variables) const

void	write_meta_data (Ioss::IfDatabaseExistsBehavior behavior) override

void	gather_communication_metadata (Ioexnl::CommunicationMetaData *meta)

void	read_region ()

void	get_edgeblocks ()

void	get_faceblocks ()

void	get_elemblocks ()

void	get_blocks (ex_entity_type entity_type, int rank_offset, const std::string &basename)

void	get_sidesets ()

template<typename T>
void	get_sets (ex_entity_type type, int64_t count, const std::string &base, const T *)

void	get_nodesets ()

void	get_edgesets ()

void	get_facesets ()

void	get_elemsets ()

void	get_commsets ()

IOSS_NODISCARD const Ioss::Map &	get_map (ex_entity_type type) const

IOSS_NODISCARD const Ioss::Map &	get_map (Ioss::Map &entity_map, int64_t entity_count, ex_entity_type entity_type, ex_inquiry inquiry_type) const

int64_t	handle_node_ids (void *ids, int64_t num_to_get) const

int64_t	handle_element_ids (const Ioss::ElementBlock eb, void ids, size_t num_to_get) const

int64_t	handle_face_ids (const Ioss::FaceBlock eb, void ids, size_t num_to_get) const

int64_t	handle_edge_ids (const Ioss::EdgeBlock eb, void ids, size_t num_to_get) const

int64_t	get_side_connectivity (const Ioss::SideBlock sd_blk, int64_t id, int64_t my_side_count, void fconnect, bool map_ids) const

template<typename INT>
int64_t	get_side_connectivity_internal (const Ioss::SideBlock sd_blk, int64_t id, int64_t side_count, INT fconnect, bool map_ids) const

int64_t	get_side_distributions (const Ioss::SideBlock sd_blk, int64_t id, int64_t my_side_count, double dist_fact, size_t data_size) const

int64_t	get_side_field (const Ioss::SideBlock sd_blk, const Ioss::Field &field, void data, size_t data_size) const

int64_t	put_side_field (const Ioss::SideBlock sd_blk, const Ioss::Field &field, void data, size_t data_size) const
	true if application code is controlling the processor id.

Private Attributes
bool	isSerialParallel {false}

Additional Inherited Members
Protected Member Functions inherited from Ioexnl::BaseDatabaseIO
IOSS_NODISCARD bool	ok_nl (bool write_message=false, std::string error_message=nullptr, int bad_count=nullptr) const override

IOSS_NODISCARD bool	begin_nl (Ioss::State state) override

IOSS_NODISCARD bool	end_nl (Ioss::State state) override

void	open_state_file (int state)

bool	begin_state_nl (int state, double time) override

bool	end_state_nl (int state, double time) override

IOSS_NODISCARD int	maximum_symbol_length () const override
	Get the length of the longest name in the database file.

void	set_maximum_symbol_length (int requested_symbol_size) override

size_t	handle_block_ids (const Ioss::EntityBlock eb, ex_entity_type map_type, Ioss::Map &entity_map, void ids, size_t num_to_get, size_t offset) const

void	compute_block_membership_nl (Ioss::SideBlock *efblock, Ioss::NameList &block_membership) const override

IOSS_NODISCARD int	int_byte_size_db () const override

void	set_int_byte_size_api (Ioss::DataSize size) const override
	Returns 4 or 8.

void	write_results_metadata (bool gather_data, Ioss::IfDatabaseExistsBehavior behavior)

void	openDatabase_nl () const override

void	closeDatabase_nl () const override

virtual int	free_file_pointer () const

IOSS_NODISCARD int	get_current_state () const

void	put_qa ()

void	put_info ()

template<typename T>
void	internal_gather_results_metadata (ex_entity_type type, std::vector< T * > entities)

void	generate_sideset_truth_table ()

void	output_results_names (ex_entity_type type, VariableNameMap &variables, bool reduction) const

int	gather_names (VariableNameMap &variables, const Ioss::GroupingEntity *ge, int index, bool reduction)

void	get_nodeblocks ()

void	get_assemblies ()

void	get_blobs ()

void	update_block_omissions_from_assemblies ()

void	add_attribute_fields (Ioss::GroupingEntity *block, int attribute_count, const std::string &type)

void	common_write_metadata (Ioss::IfDatabaseExistsBehavior behavior)

void	output_other_metadata ()

int64_t	internal_add_results_fields (ex_entity_type type, Ioss::GroupingEntity *entity, int64_t position, int64_t block_count, Ioss::IntVector &truth_table, Ioexnl::VariableNameMap &variables)

int64_t	add_results_fields (Ioss::GroupingEntity *entity, int64_t position=0)

int64_t	add_reduction_results_fields (Ioss::GroupingEntity *entity)

void	add_mesh_reduction_fields (int64_t id, Ioss::GroupingEntity *entity)

void	add_region_fields ()

void	store_reduction_field (const Ioss::Field &field, const Ioss::GroupingEntity ge, void variables) const

void	get_reduction_field (const Ioss::Field &field, const Ioss::GroupingEntity ge, void variables) const

void	write_reduction_fields () const

void	read_reduction_fields () const

IOSS_NODISCARD int	get_database_step (int global_step) const

void	flush_database_nl () const override

void	finalize_write (int state, double sim_time)

Protected Member Functions inherited from Ioss::DatabaseIO
	DatabaseIO (Region *region, std::string filename, Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props)

void	set_common_side_topology () const

template<typename T>
void	create_groups (const std::string &property_name, EntityType type, const std::string &type_name, const T *set_type)

template<typename T>
void	create_group (EntityType type, const std::string &type_name, const Ioss::NameList &group_spec, const T *set_type)

void	handle_groups ()

void	check_side_topology () const

virtual void	release_memory_nl ()

virtual void	reset_database_nl ()

Protected Attributes inherited from Ioexnl::BaseDatabaseIO
int	m_exodusFilePtr {-1}

int	m_exodusBasePtr {-1}

std::string	m_groupName

EntityIdSet	ids_

int	exodusMode {EX_CLOBBER}

int	dbRealWordSize {8}

int	maximumNameLength {32}

int	spatialDimension {0}

int64_t	edgeCount {0}

int64_t	faceCount {0}

std::map< ex_entity_type, int >	m_groupCount

Ioss::Int64Vector	nodeCmapIds

Ioss::Int64Vector	nodeCmapNodeCnts

Ioss::Int64Vector	elemCmapIds

Ioss::Int64Vector	elemCmapElemCnts

int64_t	commsetNodeCount {0}

int64_t	commsetElemCount {0}

std::map< ex_entity_type, Ioss::IntVector >	m_truthTable

std::map< ex_entity_type, VariableNameMap >	m_variables

std::map< ex_entity_type, VariableNameMap >	m_reductionVariables

std::map< ex_entity_type, std::map< int64_t, ValueContainer > >	m_reductionValues

std::vector< unsigned char >	nodeConnectivityStatus

std::map< std::string, Ioss::Int64Vector >	activeNodeSetNodesIndex

time_t	timeLastFlush {0}

int	flushInterval {-1}

bool	fileExists {false}

bool	minimizeOpenFiles {false}

bool	blockAdjacenciesCalculated {false}

bool	nodeConnectivityStatusCalculated

Protected Attributes inherited from Ioss::DatabaseIO
Ioss::PropertyManager	properties

ElementTopology *	commonSideTopology {nullptr}

std::string	originalDBFilename {}

std::string	DBFilename {}

std::string	decodedFilename {}

std::string	bbName {}

std::string	pfsName {}

std::string	dwPath {}

Ioss::State	dbState {STATE_INVALID}

int	myProcessor {0}
	number of processor this database is for

int64_t	nodeCount {0}

int64_t	elementCount {0}

TopoContainer	sideTopology {}
	Used to speed up faceblock/edgeblock calculations.

int	cycleCount {0}

int	overlayCount {0}

double	timeScaleFactor {1.0}

Ioss::SurfaceSplitType	splitType {SPLIT_BY_TOPOLOGIES}

Ioss::DatabaseUsage	dbUsage {}

Ioss::DataSize	dbIntSizeAPI {USE_INT32_API}

bool	filePerState {false}

bool	usingDataWarp {false}

bool	isParallel {false}
	true if running in parallel

bool	lowerCaseVariableNames {false}

bool	lowerCaseDatabaseNames {false}

bool	usingParallelIO {false}

Ioss::NameList	blockOmissions {}

Ioss::NameList	blockInclusions {}

Ioss::NameList	assemblyOmissions {}

Ioss::NameList	assemblyInclusions {}

Ioss::NameList	informationRecords {}

Ioss::NameList	qaRecords {}

Ioss::Map	nodeMap {"node", DBFilename, myProcessor}

Ioss::Map	edgeMap {"edge", DBFilename, myProcessor}

Ioss::Map	faceMap {"face", DBFilename, myProcessor}

Ioss::Map	elemMap {"element", DBFilename, myProcessor}

std::vector< std::vector< bool > >	blockAdjacency

Constructor & Destructor Documentation

◆ DatabaseIO()

Ioexnl::DatabaseIO::DatabaseIO	(	Ioss::Region *	region,
		const std::string &	filename,
		Ioss::DatabaseUsage	db_usage,
		Ioss_MPI_Comm	communicator,
		const Ioss::PropertyManager &	props )

Member Function Documentation

◆ check_valid_file_ptr()

bool Ioexnl::DatabaseIO::check_valid_file_ptr	(	bool	write_message,
		std::string *	error_msg,
		int *	bad_count,
		bool	abort_if_error ) const

private

◆ compute_node_status()

void Ioexnl::DatabaseIO::compute_node_status ( ) const

private

◆ gather_communication_metadata()

void Ioexnl::DatabaseIO::gather_communication_metadata ( Ioexnl::CommunicationMetaData * meta )

private

◆ get_blocks()

void Ioexnl::DatabaseIO::get_blocks	(	ex_entity_type	entity_type,
		int	rank_offset,
		const std::string &	basename )

private

◆ get_commsets()

void Ioexnl::DatabaseIO::get_commsets ( )

private

◆ get_edgeblocks()

void Ioexnl::DatabaseIO::get_edgeblocks ( )

private

◆ get_edgesets()

void Ioexnl::DatabaseIO::get_edgesets ( )

private

◆ get_elemblocks()

void Ioexnl::DatabaseIO::get_elemblocks ( )

private

◆ get_elemsets()

void Ioexnl::DatabaseIO::get_elemsets ( )

private

◆ get_faceblocks()

void Ioexnl::DatabaseIO::get_faceblocks ( )

private

◆ get_facesets()

void Ioexnl::DatabaseIO::get_facesets ( )

private

◆ get_file_pointer()

int Ioexnl::DatabaseIO::get_file_pointer ( ) const

overridevirtual

For the database types that support it, return an integer handle through which a client can directly access the underlying file. Please use sparingly and with discretion. Basically, a kluge

Implements Ioexnl::BaseDatabaseIO.

◆ get_map() [1/2]

IOSS_NODISCARD const Ioss::Map & Ioexnl::DatabaseIO::get_map ( ex_entity_type type ) const

private

◆ get_map() [2/2]

IOSS_NODISCARD const Ioss::Map & Ioexnl::DatabaseIO::get_map	(	Ioss::Map &	entity_map,
		int64_t	entity_count,
		ex_entity_type	entity_type,
		ex_inquiry	inquiry_type ) const

private

◆ get_nodesets()

void Ioexnl::DatabaseIO::get_nodesets ( )

private

◆ get_sets()

template<typename T>

void Ioexnl::DatabaseIO::get_sets	(	ex_entity_type	type,
		int64_t	count,
		const std::string &	base,
		const T *	)

private

◆ get_side_connectivity()

int64_t Ioexnl::DatabaseIO::get_side_connectivity	(	const Ioss::SideBlock *	sd_blk,
		int64_t	id,
		int64_t	my_side_count,
		void *	fconnect,
		bool	map_ids ) const

private

◆ get_side_connectivity_internal()

template<typename INT>

int64_t Ioexnl::DatabaseIO::get_side_connectivity_internal	(	const Ioss::SideBlock *	sd_blk,
		int64_t	id,
		int64_t	side_count,
		INT *	fconnect,
		bool	map_ids ) const

private

◆ get_side_distributions()

int64_t Ioexnl::DatabaseIO::get_side_distributions	(	const Ioss::SideBlock *	sd_blk,
		int64_t	id,
		int64_t	my_side_count,
		double *	dist_fact,
		size_t	data_size ) const

private

◆ get_side_field()

int64_t Ioexnl::DatabaseIO::get_side_field	(	const Ioss::SideBlock *	sd_blk,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

private

◆ get_sidesets()

void Ioexnl::DatabaseIO::get_sidesets ( )

private

◆ get_step_times_nl()

void Ioexnl::DatabaseIO::get_step_times_nl ( )

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ get_Xset_field_internal()

int64_t Ioexnl::DatabaseIO::get_Xset_field_internal	(	const Ioss::EntitySet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

private

◆ handle_edge_ids()

int64_t Ioexnl::DatabaseIO::handle_edge_ids	(	const Ioss::EdgeBlock *	eb,
		void *	ids,
		size_t	num_to_get ) const

private

◆ handle_element_ids()

int64_t Ioexnl::DatabaseIO::handle_element_ids	(	const Ioss::ElementBlock *	eb,
		void *	ids,
		size_t	num_to_get ) const

private

◆ handle_face_ids()

int64_t Ioexnl::DatabaseIO::handle_face_ids	(	const Ioss::FaceBlock *	eb,
		void *	ids,
		size_t	num_to_get ) const

private

◆ handle_node_ids()

int64_t Ioexnl::DatabaseIO::handle_node_ids	(	void *	ids,
		int64_t	num_to_get ) const

private

There are two modes we need to support in this routine:

Initial definition of node map (local->global) and nodeMap.reverse (global->local).
Redefinition of node map via 'reordering' of the original map when the nodes on this processor are the same, but their order is changed (or count because of ghosting)

So, there will be two maps the 'nodeMap.map' map is a 'direct lookup' map which maps current local position to global id and the 'nodeMap.reverse' is an associative lookup which maps the global id to 'original local'. There is also a 'nodeMap.reorder' which is direct lookup and maps current local position to original local.

The ids coming in are the global ids; their position is the "local id-1" (That is, data[0] contains the global id of local node 1 in this node block).

int local_position = nodeMap.reverse[NodeMap[i+1]] (the nodeMap.map and nodeMap.reverse are 1-based)

To determine which map to update on a call to this function, we use the following heuristics: – If the database state is 'STATE_MODEL:', then update the 'nodeMap.reverse' and 'nodeMap.map'

– If the database state is not STATE_MODEL, then leave the 'nodeMap.reverse' and 'nodeMap.map' alone since they correspond to the information already written to the database. [May want to add a STATE_REDEFINE_MODEL]

– In both cases, update the nodeMap.reorder

NOTE: The mapping is done on TRANSIENT fields only; MODEL fields should be in the original order...

◆ handle_output_file()

bool Ioexnl::DatabaseIO::handle_output_file	(	bool	write_message,
		std::string *	error_msg,
		int *	bad_count,
		bool	overwrite,
		bool	abort_if_error ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [1/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::Assembly *	assem,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [2/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::Blob *	blob,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [3/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::CommSet *	cs,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [4/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::EdgeBlock *	eb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [5/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::EdgeSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [6/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::ElementBlock *	eb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [7/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::ElementSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [8/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::FaceBlock *	eb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [9/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::FaceSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [10/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::NodeBlock *	nb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [11/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::NodeSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [12/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::Region *	reg,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [13/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::SideBlock *	fb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [14/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::SideSet *	ss,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_field_internal() [15/15]

int64_t Ioexnl::DatabaseIO::put_field_internal	(	const Ioss::StructuredBlock *	,
		const Ioss::Field &	,
		void *	,
		size_t	) const

inlineoverrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ put_side_field()

int64_t Ioexnl::DatabaseIO::put_side_field	(	const Ioss::SideBlock *	sd_blk,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

private

true if application code is controlling the processor id.

◆ put_Xset_field_internal()

int64_t Ioexnl::DatabaseIO::put_Xset_field_internal	(	const Ioss::EntitySet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

private

◆ read_attribute_field()

int64_t Ioexnl::DatabaseIO::read_attribute_field	(	const Ioss::Field &	field,
		const Ioss::GroupingEntity *	ge,
		void *	data ) const

private

◆ read_communication_metadata()

void Ioexnl::DatabaseIO::read_communication_metadata ( )

private

◆ read_elements()

void Ioexnl::DatabaseIO::read_elements ( const Ioss::ElementBlock & block )

private

◆ read_meta_data_nl()

void Ioexnl::DatabaseIO::read_meta_data_nl ( )

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ read_nodal_coordinates()

int64_t Ioexnl::DatabaseIO::read_nodal_coordinates ( )

private

◆ read_region()

void Ioexnl::DatabaseIO::read_region ( )

private

◆ read_ss_transient_field()

int64_t Ioexnl::DatabaseIO::read_ss_transient_field	(	const Ioss::Field &	field,
		int64_t	id,
		void *	variables,
		std::vector< int > &	is_valid_side ) const

private

◆ read_transient_field()

int64_t Ioexnl::DatabaseIO::read_transient_field	(	const Ioexnl::VariableNameMap &	variables,
		const Ioss::Field &	field,
		const Ioss::GroupingEntity *	ge,
		void *	data ) const

private

◆ write_attribute_field()

int64_t Ioexnl::DatabaseIO::write_attribute_field	(	const Ioss::Field &	field,
		const Ioss::GroupingEntity *	ge,
		void *	data ) const

private

◆ write_entity_transient_field()

void Ioexnl::DatabaseIO::write_entity_transient_field	(	const Ioss::Field &	field,
		const Ioss::GroupingEntity *	ge,
		int64_t	count,
		void *	variables ) const

private

◆ write_meta_data()

void Ioexnl::DatabaseIO::write_meta_data ( Ioss::IfDatabaseExistsBehavior behavior )

overrideprivatevirtual

Implements Ioexnl::BaseDatabaseIO.

◆ write_nodal_transient_field()

void Ioexnl::DatabaseIO::write_nodal_transient_field	(	const Ioss::Field &	field,
		const Ioss::NodeBlock *	ge,
		int64_t	count,
		void *	variables ) const

private

Member Data Documentation

◆ isSerialParallel

bool Ioexnl::DatabaseIO::isSerialParallel {false}

mutableprivate

The documentation for this class was generated from the following files:

src/exonull/Ioexnl_DatabaseIO.h
src/exonull/Ioexnl_DatabaseIO.C

Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

◆ DatabaseIO()

Member Function Documentation

◆ check_valid_file_ptr()

◆ compute_node_status()

◆ gather_communication_metadata()

◆ get_blocks()

◆ get_commsets()

◆ get_edgeblocks()

◆ get_edgesets()

◆ get_elemblocks()

◆ get_elemsets()

◆ get_faceblocks()

◆ get_facesets()

◆ get_file_pointer()

◆ get_map() [1/2]

◆ get_map() [2/2]

◆ get_nodesets()

◆ get_sets()

◆ get_side_connectivity()

◆ get_side_connectivity_internal()

◆ get_side_distributions()

◆ get_side_field()

◆ get_sidesets()

◆ get_step_times_nl()

◆ get_Xset_field_internal()

◆ handle_edge_ids()

◆ handle_element_ids()

◆ handle_face_ids()

◆ handle_node_ids()

◆ handle_output_file()

◆ put_field_internal() [1/15]

◆ put_field_internal() [2/15]

◆ put_field_internal() [3/15]

◆ put_field_internal() [4/15]

◆ put_field_internal() [5/15]

◆ put_field_internal() [6/15]

◆ put_field_internal() [7/15]

◆ put_field_internal() [8/15]

◆ put_field_internal() [9/15]

◆ put_field_internal() [10/15]

◆ put_field_internal() [11/15]

◆ put_field_internal() [12/15]

◆ put_field_internal() [13/15]

◆ put_field_internal() [14/15]

◆ put_field_internal() [15/15]

◆ put_side_field()

◆ put_Xset_field_internal()

◆ read_attribute_field()

◆ read_communication_metadata()

◆ read_elements()

◆ read_meta_data_nl()

◆ read_nodal_coordinates()

◆ read_region()

◆ read_ss_transient_field()

◆ read_transient_field()

◆ write_attribute_field()

◆ write_entity_transient_field()

◆ write_meta_data()

◆ write_nodal_transient_field()

Member Data Documentation

◆ isSerialParallel