#include <Ioexnl_BaseDatabaseIO.h>

Inheritance diagram for Ioexnl::BaseDatabaseIO:

Collaboration diagram for Ioexnl::BaseDatabaseIO:

Public Member Functions
	BaseDatabaseIO (Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props)

IOSS_NODISCARD std::string	get_format () const override

IOSS_NODISCARD unsigned	entity_field_support () const override

Public Member Functions inherited from Ioss::DatabaseIO
	DatabaseIO ()=delete

	DatabaseIO (const DatabaseIO &)=delete

	DatabaseIO (DatabaseIO &&)=delete

DatabaseIO &	operator= (const DatabaseIO &)=delete

DatabaseIO &	operator= (DatabaseIO &&)=delete

virtual	~DatabaseIO ()

IOSS_NODISCARD bool	ok (bool write_message=false, std::string error_message=nullptr, int bad_count=nullptr) const
	Check to see if database state is OK.

IOSS_NODISCARD bool	using_parallel_io () const

IOSS_NODISCARD int64_t	node_global_to_local (int64_t global, bool must_exist) const
	Get the local (process-specific) node number corresponding to a global node number.

IOSS_NODISCARD int64_t	element_global_to_local (int64_t global) const

virtual IOSS_NODISCARD bool	node_major () const

void	release_memory ()

virtual void	finalize_database () const

void	set_pfs_name (const std::string &name) const

IOSS_NODISCARD std::string	get_pfs_name () const

void	set_dw_name (const std::string &name) const
	this will be the name in BB namespace

IOSS_NODISCARD std::string	get_dw_name () const

IOSS_NODISCARD std::string	get_dw_path () const
	We call this ONLY after we assure that using_dw() is TRUE.

void	check_set_dw () const

IOSS_NODISCARD bool	using_dw () const

IOSS_NODISCARD std::string	get_filename () const
	Get the file name associated with the database.

IOSS_NODISCARD const std::string &	decoded_filename () const
	Get a file-per-processor filename associated with the database.

IOSS_NODISCARD bool	is_input () const
	Determine whether the database is an input database.

IOSS_NODISCARD Ioss::DatabaseUsage	usage () const
	Get the Ioss::DatabaseUsage type of the database.

virtual IOSS_NODISCARD bool	needs_shared_node_information () const
	Determine whether the database needs information about process ownership of nodes.

IOSS_NODISCARD Ioss::IfDatabaseExistsBehavior	open_create_behavior () const

void	set_region (Region *region)

void	open_dw (const std::string &filename) const
	If we are planning to use BB(aka Burst Buffer) service, we will call simple C API provided by Cray DataWarp module.

void	close_dw () const
	Function which invokes stageout from BB to Disk, prior to completion of final close.

void	openDatabase () const

void	closeDatabase () const

void	flush_database () const

void	reset_database ()

bool	open_internal_change_set (const std::string &set_name)
	If a database type supports internal change sets and if the database contains internal change sets, open the specified set.

bool	create_internal_change_set (const std::string &set_name)
	If a database type supports internal change sets, create the specified set.

int	num_internal_change_set ()
	If a database type supports internal change sets, and if the database contains internal change sets, return the number of change sets.

bool	open_internal_change_set (int set_index)
	If a database type supports internal change sets, open the change set specified [zero-based] index.

Ioss::NameList	internal_change_set_describe (bool return_full_names=false)
	If a database type supports internal change sets, return a list of set names.

bool	supports_internal_change_set ()
	Checks if a database type supports internal change sets.

virtual IOSS_NODISCARD std::string	get_internal_change_set_name () const

bool	begin (Ioss::State state)
	Set the database to the given State.

bool	end (Ioss::State state)
	Return the database to STATE_CLOSED.

bool	begin_state (int state, double time)

bool	end_state (int state, double time)

void	read_meta_data ()

void	get_step_times ()

std::vector< double >	get_db_step_times ()
	Return the list of timesteps in the database contingent on certain controlling properties.

virtual IOSS_NODISCARD bool	internal_edges_available () const

virtual IOSS_NODISCARD bool	internal_faces_available () const

IOSS_NODISCARD const Ioss::NameList &	get_information_records () const
	Get all information records (informative strings) for the database.

void	add_information_records (const Ioss::NameList &info)
	Add multiple information records (informative strings) to the database.

void	add_information_record (const std::string &info)
	Add an information record (an informative string) to the database.

IOSS_NODISCARD const Ioss::NameList &	get_qa_records () const
	Get all QA records, each of which consists of 4 strings, from the database.

void	add_qa_record (const std::string &code, const std::string &code_qa, const std::string &date, const std::string &time)
	Add a QA record, which consists of 4 strings, to the database.

IOSS_NODISCARD bool	get_logging () const

void	set_logging (bool on_off)

IOSS_NODISCARD bool	get_nan_detection () const

void	set_nan_detection (bool on_off)

template<typename T>
int64_t	get_field (const T reg, const Field &field, void data, size_t data_size) const

template<typename T>
int64_t	put_field (const T reg, const Field &field, void data, size_t data_size) const

template<typename T>
int64_t	get_zc_field (const T reg, const Field &field, void data, size_t data_size) const

IOSS_NODISCARD bool	is_parallel_consistent () const

void	set_parallel_consistency (bool on_off)

IOSS_NODISCARD bool	get_use_generic_canonical_name () const

void	set_use_generic_canonical_name (bool yes_no)

IOSS_NODISCARD bool	ignore_database_names () const

void	ignore_database_names (bool yes_no)

IOSS_NODISCARD bool	get_ignore_realn_fields () const

void	set_ignore_realn_fields (bool yes_no)

IOSS_NODISCARD std::string	get_component_name (const Ioss::Field &field, Ioss::Field::InOut in_out, int component) const

IOSS_NODISCARD char	get_field_separator () const

IOSS_NODISCARD bool	get_field_recognition () const

IOSS_NODISCARD bool	get_field_strip_trailing_ () const

void	set_field_separator (char separator)
	Set the character used to separate a field suffix from the field basename when recognizing vector, tensor fields.

void	set_field_recognition (bool yes_no)

void	set_field_strip_trailing_ (bool yes_no)

IOSS_NODISCARD DuplicateFieldBehavior	get_duplicate_field_behavior () const

void	set_lowercase_variable_names (bool true_false) const

void	set_lowercase_database_names (bool true_false) const

void	set_lower_case_variable_names (bool true_false) const

void	set_lower_case_database_names (bool true_false) const

void	set_surface_split_type (Ioss::SurfaceSplitType split_type)

IOSS_NODISCARD Ioss::SurfaceSplitType	get_surface_split_type () const

void	set_block_omissions (const Ioss::NameList &omissions, const Ioss::NameList &inclusions={})

void	set_assembly_omissions (const Ioss::NameList &omissions, const Ioss::NameList &inclusions={})

void	get_block_adjacencies (const Ioss::ElementBlock *eb, Ioss::NameList &block_adjacency) const

void	compute_block_membership (Ioss::SideBlock *efblock, Ioss::NameList &block_membership) const

IOSS_NODISCARD AxisAlignedBoundingBox	get_bounding_box (const Ioss::NodeBlock *nb) const

IOSS_NODISCARD AxisAlignedBoundingBox	get_bounding_box (const Ioss::ElementBlock *eb) const

IOSS_NODISCARD AxisAlignedBoundingBox	get_bounding_box (const Ioss::StructuredBlock *sb) const

IOSS_NODISCARD int	int_byte_size_api () const
	Returns 4 or 8.

IOSS_NODISCARD Ioss::DataSize	int_byte_size_data_size () const

IOSS_NODISCARD Region *	get_region () const

void	set_cycle_count (int count) const

IOSS_NODISCARD int	get_cycle_count () const

void	set_overlay_count (int count) const

IOSS_NODISCARD int	get_overlay_count () const

void	set_file_per_state (bool yes_no) const

IOSS_NODISCARD bool	get_file_per_state () const

void	set_time_scale_factor (double factor)

IOSS_NODISCARD const Ioss::ParallelUtils &	util () const

IOSS_NODISCARD const Ioss::PropertyManager &	get_property_manager () const

IOSS_NODISCARD int	parallel_rank () const
	Get the processor that this mesh database is on.

IOSS_NODISCARD int	parallel_size () const

IOSS_NODISCARD bool	is_parallel () const

void	progress (const std::string &output) const

virtual std::vector< size_t >	get_entity_field_data (const std::string &field_name, const std::vector< Ioss::ElementBlock * > &elem_blocks, void *data, size_t data_size) const

template<>
void	create_group (EntityType type, const std::string &, const Ioss::NameList &group_spec, const SideSet *)

Protected Member Functions
IOSS_NODISCARD bool	ok_nl (bool write_message=false, std::string error_message=nullptr, int bad_count=nullptr) const override

IOSS_NODISCARD bool	begin_nl (Ioss::State state) override

IOSS_NODISCARD bool	end_nl (Ioss::State state) override

void	open_state_file (int state)

bool	begin_state_nl (int state, double time) override

bool	end_state_nl (int state, double time) override

void	get_step_times_nl () override=0

IOSS_NODISCARD int	maximum_symbol_length () const override
	Get the length of the longest name in the database file.

void	set_maximum_symbol_length (int requested_symbol_size) override

size_t	handle_block_ids (const Ioss::EntityBlock eb, ex_entity_type map_type, Ioss::Map &entity_map, void ids, size_t num_to_get, size_t offset) const

void	compute_block_membership_nl (Ioss::SideBlock *efblock, Ioss::NameList &block_membership) const override

IOSS_NODISCARD int	int_byte_size_db () const override

void	set_int_byte_size_api (Ioss::DataSize size) const override
	Returns 4 or 8.

int64_t	put_field_internal (const Ioss::Region reg, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::NodeBlock nb, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::EdgeBlock nb, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::FaceBlock nb, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::ElementBlock eb, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::StructuredBlock sb, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::SideBlock fb, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::NodeSet ns, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::EdgeSet ns, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::FaceSet ns, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::ElementSet ns, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::SideSet fs, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::CommSet cs, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::Assembly as, const Ioss::Field &field, void data, size_t data_size) const override=0

int64_t	put_field_internal (const Ioss::Blob blob, const Ioss::Field &field, void data, size_t data_size) const override=0

virtual void	write_meta_data (Ioss::IfDatabaseExistsBehavior behavior)=0

void	write_results_metadata (bool gather_data, Ioss::IfDatabaseExistsBehavior behavior)

void	openDatabase_nl () const override

void	closeDatabase_nl () const override

IOSS_NODISCARD int	get_file_pointer () const override=0

virtual int	free_file_pointer () const

virtual bool	handle_output_file (bool write_message, std::string error_msg, int bad_count, bool overwrite, bool abort_if_error) const =0

IOSS_NODISCARD int	get_current_state () const

void	put_qa ()

void	put_info ()

template<typename T>
void	internal_gather_results_metadata (ex_entity_type type, std::vector< T * > entities)

void	generate_sideset_truth_table ()

void	output_results_names (ex_entity_type type, VariableNameMap &variables, bool reduction) const

int	gather_names (VariableNameMap &variables, const Ioss::GroupingEntity *ge, int index, bool reduction)

void	get_nodeblocks ()

void	get_assemblies ()

void	get_blobs ()

void	update_block_omissions_from_assemblies ()

void	add_attribute_fields (Ioss::GroupingEntity *block, int attribute_count, const std::string &type)

void	common_write_metadata (Ioss::IfDatabaseExistsBehavior behavior)

void	output_other_metadata ()

int64_t	internal_add_results_fields (ex_entity_type type, Ioss::GroupingEntity *entity, int64_t position, int64_t block_count, Ioss::IntVector &truth_table, Ioexnl::VariableNameMap &variables)

int64_t	add_results_fields (Ioss::GroupingEntity *entity, int64_t position=0)

int64_t	add_reduction_results_fields (Ioss::GroupingEntity *entity)

void	add_mesh_reduction_fields (int64_t id, Ioss::GroupingEntity *entity)

void	add_region_fields ()

void	store_reduction_field (const Ioss::Field &field, const Ioss::GroupingEntity ge, void variables) const

void	get_reduction_field (const Ioss::Field &field, const Ioss::GroupingEntity ge, void variables) const

void	write_reduction_fields () const

void	read_reduction_fields () const

IOSS_NODISCARD int	get_database_step (int global_step) const

void	flush_database_nl () const override

void	finalize_write (int state, double sim_time)

Protected Member Functions inherited from Ioss::DatabaseIO
	DatabaseIO (Region *region, std::string filename, Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props)

void	set_common_side_topology () const

template<typename T>
void	create_groups (const std::string &property_name, EntityType type, const std::string &type_name, const T *set_type)

template<typename T>
void	create_group (EntityType type, const std::string &type_name, const Ioss::NameList &group_spec, const T *set_type)

void	handle_groups ()

void	check_side_topology () const

virtual void	release_memory_nl ()

virtual void	reset_database_nl ()

Protected Attributes
int	m_exodusFilePtr {-1}

int	m_exodusBasePtr {-1}

std::string	m_groupName

EntityIdSet	ids_

int	exodusMode {EX_CLOBBER}

int	dbRealWordSize {8}

int	maximumNameLength {32}

int	spatialDimension {0}

int64_t	edgeCount {0}

int64_t	faceCount {0}

std::map< ex_entity_type, int >	m_groupCount

Ioss::Int64Vector	nodeCmapIds

Ioss::Int64Vector	nodeCmapNodeCnts

Ioss::Int64Vector	elemCmapIds

Ioss::Int64Vector	elemCmapElemCnts

int64_t	commsetNodeCount {0}

int64_t	commsetElemCount {0}

std::map< ex_entity_type, Ioss::IntVector >	m_truthTable

std::map< ex_entity_type, VariableNameMap >	m_variables

std::map< ex_entity_type, VariableNameMap >	m_reductionVariables

std::map< ex_entity_type, std::map< int64_t, ValueContainer > >	m_reductionValues

std::vector< unsigned char >	nodeConnectivityStatus

std::map< std::string, Ioss::Int64Vector >	activeNodeSetNodesIndex

time_t	timeLastFlush {0}

int	flushInterval {-1}

bool	fileExists {false}

bool	minimizeOpenFiles {false}

bool	blockAdjacenciesCalculated {false}

bool	nodeConnectivityStatusCalculated

Protected Attributes inherited from Ioss::DatabaseIO
Ioss::PropertyManager	properties

ElementTopology *	commonSideTopology {nullptr}

std::string	originalDBFilename {}

std::string	DBFilename {}

std::string	decodedFilename {}

std::string	bbName {}

std::string	pfsName {}

std::string	dwPath {}

Ioss::State	dbState {STATE_INVALID}

int	myProcessor {0}
	number of processor this database is for

int64_t	nodeCount {0}

int64_t	elementCount {0}

TopoContainer	sideTopology {}
	Used to speed up faceblock/edgeblock calculations.

int	cycleCount {0}

int	overlayCount {0}

double	timeScaleFactor {1.0}

Ioss::SurfaceSplitType	splitType {SPLIT_BY_TOPOLOGIES}

Ioss::DatabaseUsage	dbUsage {}

Ioss::DataSize	dbIntSizeAPI {USE_INT32_API}

bool	filePerState {false}

bool	usingDataWarp {false}

bool	isParallel {false}
	true if running in parallel

bool	lowerCaseVariableNames {false}

bool	lowerCaseDatabaseNames {false}

bool	usingParallelIO {false}

Ioss::NameList	blockOmissions {}

Ioss::NameList	blockInclusions {}

Ioss::NameList	assemblyOmissions {}

Ioss::NameList	assemblyInclusions {}

Ioss::NameList	informationRecords {}

Ioss::NameList	qaRecords {}

Ioss::Map	nodeMap {"node", DBFilename, myProcessor}

Ioss::Map	edgeMap {"edge", DBFilename, myProcessor}

Ioss::Map	faceMap {"face", DBFilename, myProcessor}

Ioss::Map	elemMap {"element", DBFilename, myProcessor}

std::vector< std::vector< bool > >	blockAdjacency

Constructor & Destructor Documentation

◆ BaseDatabaseIO()

Ioexnl::BaseDatabaseIO::BaseDatabaseIO	(	Ioss::Region *	region,
		const std::string &	filename,
		Ioss::DatabaseUsage	db_usage,
		Ioss_MPI_Comm	communicator,
		const Ioss::PropertyManager &	props )

Member Function Documentation

◆ add_attribute_fields()

void Ioexnl::BaseDatabaseIO::add_attribute_fields	(	Ioss::GroupingEntity *	block,
		int	attribute_count,
		const std::string &	type )

protected

◆ add_mesh_reduction_fields()

void Ioexnl::BaseDatabaseIO::add_mesh_reduction_fields	(	int64_t	id,
		Ioss::GroupingEntity *	entity )

protected

◆ add_reduction_results_fields()

int64_t Ioexnl::BaseDatabaseIO::add_reduction_results_fields ( Ioss::GroupingEntity * entity )

protected

◆ add_region_fields()

void Ioexnl::BaseDatabaseIO::add_region_fields ( )

protected

◆ add_results_fields()

int64_t Ioexnl::BaseDatabaseIO::add_results_fields	(	Ioss::GroupingEntity *	entity,
		int64_t	position = 0 )

protected

◆ begin_nl()

bool Ioexnl::BaseDatabaseIO::begin_nl ( Ioss::State state )

overrideprotectedvirtual

Implements Ioss::DatabaseIO.

◆ begin_state_nl()

bool Ioexnl::BaseDatabaseIO::begin_state_nl	(	int	state,
		double	time )

overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ closeDatabase_nl()

void Ioexnl::BaseDatabaseIO::closeDatabase_nl ( ) const

inlineoverrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ common_write_metadata()

void Ioexnl::BaseDatabaseIO::common_write_metadata ( Ioss::IfDatabaseExistsBehavior behavior )

protected

◆ compute_block_membership_nl()

void Ioexnl::BaseDatabaseIO::compute_block_membership_nl	(	Ioss::SideBlock *	efblock,
		Ioss::NameList &	block_membership ) const

overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ end_nl()

bool Ioexnl::BaseDatabaseIO::end_nl ( Ioss::State state )

overrideprotectedvirtual

Implements Ioss::DatabaseIO.

◆ end_state_nl()

bool Ioexnl::BaseDatabaseIO::end_state_nl	(	int	state,
		double	time )

overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ entity_field_support()

unsigned Ioexnl::BaseDatabaseIO::entity_field_support ( ) const

overridevirtual

Implements Ioss::DatabaseIO.

◆ finalize_write()

void Ioexnl::BaseDatabaseIO::finalize_write	(	int	state,
		double	sim_time )

protected

◆ flush_database_nl()

void Ioexnl::BaseDatabaseIO::flush_database_nl ( ) const

overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ free_file_pointer()

int Ioexnl::BaseDatabaseIO::free_file_pointer ( ) const

protectedvirtual

◆ gather_names()

int Ioexnl::BaseDatabaseIO::gather_names	(	VariableNameMap &	variables,
		const Ioss::GroupingEntity *	ge,
		int	index,
		bool	reduction )

protected

◆ generate_sideset_truth_table()

void Ioexnl::BaseDatabaseIO::generate_sideset_truth_table ( )

protected

◆ get_assemblies()

void Ioexnl::BaseDatabaseIO::get_assemblies ( )

protected

◆ get_blobs()

void Ioexnl::BaseDatabaseIO::get_blobs ( )

protected

◆ get_current_state()

int Ioexnl::BaseDatabaseIO::get_current_state ( ) const

protected

◆ get_database_step()

int Ioexnl::BaseDatabaseIO::get_database_step ( int global_step ) const

protected

◆ get_file_pointer()

int Ioexnl::BaseDatabaseIO::get_file_pointer ( ) const

overrideprotectedpure virtual

For the database types that support it, return an integer handle through which a client can directly access the underlying file. Please use sparingly and with discretion. Basically, a kluge

Reimplemented from Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ get_format()

IOSS_NODISCARD std::string Ioexnl::BaseDatabaseIO::get_format ( ) const

inlineoverridevirtual

Return a string specifying underlying format of database (exodus, cgns, ...)

Implements Ioss::DatabaseIO.

◆ get_nodeblocks()

void Ioexnl::BaseDatabaseIO::get_nodeblocks ( )

protected

◆ get_reduction_field()

void Ioexnl::BaseDatabaseIO::get_reduction_field	(	const Ioss::Field &	field,
		const Ioss::GroupingEntity *	ge,
		void *	variables ) const

protected

◆ get_step_times_nl()

void Ioexnl::BaseDatabaseIO::get_step_times_nl ( )

overrideprotectedpure virtual

Reimplemented from Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ handle_block_ids()

size_t Ioexnl::BaseDatabaseIO::handle_block_ids	(	const Ioss::EntityBlock *	eb,
		ex_entity_type	map_type,
		Ioss::Map &	entity_map,
		void *	ids,
		size_t	num_to_get,
		size_t	offset ) const

protected

NOTE: "element" is generic for "element", "face", or "edge"

There are two modes we need to support in this routine:

Initial definition of element map (local->global) and elemMap.reverse (global->local).
Redefinition of element map via 'reordering' of the original map when the elements on this processor are the same, but their order is changed.

So, there will be two maps the 'elemMap.map' map is a 'direct lookup' map which maps current local position to global id and the 'elemMap.reverse' is an associative lookup which maps the global id to 'original local'. There is also a 'elemMap.reorder' which is direct lookup and maps current local position to original local.

The ids coming in are the global ids; their position is the local id -1 (That is, data[0] contains the global id of local element 1 in this element block). The 'model-local' id is given by eb_offset + 1 + position:

int local_position = elemMap.reverse[ElementMap[i+1]] (the elemMap.map and elemMap.reverse are 1-based)

But, this assumes 1..numel elements are being output at the same time; we are actually outputting a blocks worth of elements at a time, so we need to consider the block offsets. So... local-in-block position 'i' is index 'eb_offset+i' in 'elemMap.map' and the 'local_position' within the element blocks data arrays is 'local_position-eb_offset'. With this, the position within the data array of this element block is:

int eb_position = elemMap.reverse[elemMap.map[eb_offset+i+1]]-eb_offset-1

To determine which map to update on a call to this function, we use the following heuristics: – If the database state is 'Ioss::STATE_MODEL:', then update the 'elemMap.reverse'. – If the database state is not Ioss::STATE_MODEL, then leave the 'elemMap.reverse' alone since it corresponds to the information already written to the database. [May want to add a Ioss::STATE_REDEFINE_MODEL] – Always update elemMap.map to match the passed in 'ids' array.

NOTE: the maps are built an element block at a time... NOTE: The mapping is done on TRANSIENT fields only; MODEL fields should be in the original order...

◆ handle_output_file()

virtual bool Ioexnl::BaseDatabaseIO::handle_output_file	(	bool	write_message,
		std::string *	error_msg,
		int *	bad_count,
		bool	overwrite,
		bool	abort_if_error ) const

protectedpure virtual

Implemented in Ioexnl::DatabaseIO.

◆ int_byte_size_db()

int Ioexnl::BaseDatabaseIO::int_byte_size_db ( ) const

overrideprotectedvirtual

Implements Ioss::DatabaseIO.

◆ internal_add_results_fields()

int64_t Ioexnl::BaseDatabaseIO::internal_add_results_fields	(	ex_entity_type	type,
		Ioss::GroupingEntity *	entity,
		int64_t	position,
		int64_t	block_count,
		Ioss::IntVector &	truth_table,
		Ioexnl::VariableNameMap &	variables )

protected

◆ internal_gather_results_metadata()

template<typename T>

void Ioexnl::BaseDatabaseIO::internal_gather_results_metadata	(	ex_entity_type	type,
		std::vector< T * >	entities )

protected

◆ maximum_symbol_length()

IOSS_NODISCARD int Ioexnl::BaseDatabaseIO::maximum_symbol_length ( ) const

inlineoverrideprotectedvirtual

Get the length of the longest name in the database file.

Returns: The length, or 0 for unlimited.

Reimplemented from Ioss::DatabaseIO.

◆ ok_nl()

bool Ioexnl::BaseDatabaseIO::ok_nl	(	bool	write_message = false,
		std::string *	error_message = nullptr,
		int *	bad_count = nullptr ) const

overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ open_state_file()

void Ioexnl::BaseDatabaseIO::open_state_file ( int state )

protected

◆ openDatabase_nl()

void Ioexnl::BaseDatabaseIO::openDatabase_nl ( ) const

inlineoverrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ output_other_metadata()

void Ioexnl::BaseDatabaseIO::output_other_metadata ( )

protected

◆ output_results_names()

void Ioexnl::BaseDatabaseIO::output_results_names	(	ex_entity_type	type,
		VariableNameMap &	variables,
		bool	reduction ) const

protected

◆ put_field_internal() [1/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::Assembly *	as,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [2/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::Blob *	blob,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [3/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::CommSet *	cs,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [4/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::EdgeBlock *	nb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [5/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::EdgeSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [6/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::ElementBlock *	eb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [7/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::ElementSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [8/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::FaceBlock *	nb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [9/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::FaceSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [10/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::NodeBlock *	nb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [11/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::NodeSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [12/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::Region *	reg,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [13/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::SideBlock *	fb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [14/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::SideSet *	fs,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [15/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal	(	const Ioss::StructuredBlock *	sb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_info()

void Ioexnl::BaseDatabaseIO::put_info ( )

protected

◆ put_qa()

void Ioexnl::BaseDatabaseIO::put_qa ( )

protected

◆ read_reduction_fields()

void Ioexnl::BaseDatabaseIO::read_reduction_fields ( ) const

protected

◆ set_int_byte_size_api()

void Ioexnl::BaseDatabaseIO::set_int_byte_size_api ( Ioss::DataSize size ) const

overrideprotectedvirtual

Returns 4 or 8.

Set the number of bytes used to represent an integer.

Parameters

[in] size The number of bytes. This is 4 for INT32 or 8 for INT64.

Reimplemented from Ioss::DatabaseIO.

◆ set_maximum_symbol_length()

void Ioexnl::BaseDatabaseIO::set_maximum_symbol_length ( int requested_symbol_size )

inlineoverrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ store_reduction_field()

void Ioexnl::BaseDatabaseIO::store_reduction_field	(	const Ioss::Field &	field,
		const Ioss::GroupingEntity *	ge,
		void *	variables ) const

protected

◆ update_block_omissions_from_assemblies()

void Ioexnl::BaseDatabaseIO::update_block_omissions_from_assemblies ( )

protected

◆ write_meta_data()

virtual void Ioexnl::BaseDatabaseIO::write_meta_data ( Ioss::IfDatabaseExistsBehavior behavior )

protectedpure virtual

Implemented in Ioexnl::DatabaseIO.

◆ write_reduction_fields()

void Ioexnl::BaseDatabaseIO::write_reduction_fields ( ) const

protected

◆ write_results_metadata()

void Ioexnl::BaseDatabaseIO::write_results_metadata	(	bool	gather_data,
		Ioss::IfDatabaseExistsBehavior	behavior )

protected

Member Data Documentation

◆ activeNodeSetNodesIndex

std::map<std::string, Ioss::Int64Vector> Ioexnl::BaseDatabaseIO::activeNodeSetNodesIndex

mutableprotected

◆ blockAdjacenciesCalculated

bool Ioexnl::BaseDatabaseIO::blockAdjacenciesCalculated {false}

mutableprotected

◆ commsetElemCount

int64_t Ioexnl::BaseDatabaseIO::commsetElemCount {0}

protected

◆ commsetNodeCount

int64_t Ioexnl::BaseDatabaseIO::commsetNodeCount {0}

protected

◆ dbRealWordSize

int Ioexnl::BaseDatabaseIO::dbRealWordSize {8}

mutableprotected

◆ edgeCount

int64_t Ioexnl::BaseDatabaseIO::edgeCount {0}

protected

◆ elemCmapElemCnts

Ioss::Int64Vector Ioexnl::BaseDatabaseIO::elemCmapElemCnts

protected

◆ elemCmapIds

Ioss::Int64Vector Ioexnl::BaseDatabaseIO::elemCmapIds

protected

◆ exodusMode

int Ioexnl::BaseDatabaseIO::exodusMode {EX_CLOBBER}

mutableprotected

◆ faceCount

int64_t Ioexnl::BaseDatabaseIO::faceCount {0}

protected

◆ fileExists

bool Ioexnl::BaseDatabaseIO::fileExists {false}

mutableprotected

◆ flushInterval

int Ioexnl::BaseDatabaseIO::flushInterval {-1}

protected

◆ ids_

EntityIdSet Ioexnl::BaseDatabaseIO::ids_

mutableprotected

◆ m_exodusBasePtr

int Ioexnl::BaseDatabaseIO::m_exodusBasePtr {-1}

mutableprotected

◆ m_exodusFilePtr

int Ioexnl::BaseDatabaseIO::m_exodusFilePtr {-1}

mutableprotected

◆ m_groupCount

std::map<ex_entity_type, int> Ioexnl::BaseDatabaseIO::m_groupCount

mutableprotected

◆ m_groupName

std::string Ioexnl::BaseDatabaseIO::m_groupName

mutableprotected

◆ m_reductionValues

std::map<ex_entity_type, std::map<int64_t, ValueContainer> > Ioexnl::BaseDatabaseIO::m_reductionValues

mutableprotected

◆ m_reductionVariables

std::map<ex_entity_type, VariableNameMap> Ioexnl::BaseDatabaseIO::m_reductionVariables

mutableprotected

◆ m_truthTable

std::map<ex_entity_type, Ioss::IntVector> Ioexnl::BaseDatabaseIO::m_truthTable

mutableprotected

◆ m_variables

std::map<ex_entity_type, VariableNameMap> Ioexnl::BaseDatabaseIO::m_variables

mutableprotected

◆ maximumNameLength

int Ioexnl::BaseDatabaseIO::maximumNameLength {32}

mutableprotected

◆ minimizeOpenFiles

bool Ioexnl::BaseDatabaseIO::minimizeOpenFiles {false}

mutableprotected

◆ nodeCmapIds

Ioss::Int64Vector Ioexnl::BaseDatabaseIO::nodeCmapIds

protected

◆ nodeCmapNodeCnts

Ioss::Int64Vector Ioexnl::BaseDatabaseIO::nodeCmapNodeCnts

protected

◆ nodeConnectivityStatus

std::vector<unsigned char> Ioexnl::BaseDatabaseIO::nodeConnectivityStatus

mutableprotected

◆ nodeConnectivityStatusCalculated

bool Ioexnl::BaseDatabaseIO::nodeConnectivityStatusCalculated

mutableprotected

Initial value:

{

false}

◆ spatialDimension

int Ioexnl::BaseDatabaseIO::spatialDimension {0}

protected

◆ timeLastFlush

time_t Ioexnl::BaseDatabaseIO::timeLastFlush {0}

protected

The documentation for this class was generated from the following files:

src/exonull/Ioexnl_BaseDatabaseIO.h
src/exonull/Ioexnl_BaseDatabaseIO.C

Public Member Functions

Protected Member Functions

Protected Attributes

Constructor & Destructor Documentation

◆ BaseDatabaseIO()

Member Function Documentation

◆ add_attribute_fields()

◆ add_mesh_reduction_fields()

◆ add_reduction_results_fields()

◆ add_region_fields()

◆ add_results_fields()

◆ begin_nl()

◆ begin_state_nl()

◆ closeDatabase_nl()

◆ common_write_metadata()

◆ compute_block_membership_nl()

◆ end_nl()

◆ end_state_nl()

◆ entity_field_support()

◆ finalize_write()

◆ flush_database_nl()

◆ free_file_pointer()

◆ gather_names()

◆ generate_sideset_truth_table()

◆ get_assemblies()

◆ get_blobs()

◆ get_current_state()

◆ get_database_step()

◆ get_file_pointer()

◆ get_format()

◆ get_nodeblocks()

◆ get_reduction_field()

◆ get_step_times_nl()

◆ handle_block_ids()

◆ handle_output_file()

◆ int_byte_size_db()

◆ internal_add_results_fields()

◆ internal_gather_results_metadata()

◆ maximum_symbol_length()

◆ ok_nl()

◆ open_state_file()

◆ openDatabase_nl()

◆ output_other_metadata()

◆ output_results_names()

◆ put_field_internal() [1/15]

◆ put_field_internal() [2/15]

◆ put_field_internal() [3/15]

◆ put_field_internal() [4/15]

◆ put_field_internal() [5/15]

◆ put_field_internal() [6/15]

◆ put_field_internal() [7/15]

◆ put_field_internal() [8/15]

◆ put_field_internal() [9/15]

◆ put_field_internal() [10/15]

◆ put_field_internal() [11/15]

◆ put_field_internal() [12/15]

◆ put_field_internal() [13/15]

◆ put_field_internal() [14/15]

◆ put_field_internal() [15/15]

◆ put_info()

◆ put_qa()

◆ read_reduction_fields()

◆ set_int_byte_size_api()

◆ set_maximum_symbol_length()

◆ store_reduction_field()

◆ update_block_omissions_from_assemblies()

◆ write_meta_data()

◆ write_reduction_fields()

◆ write_results_metadata()

Member Data Documentation

◆ activeNodeSetNodesIndex

◆ blockAdjacenciesCalculated

◆ commsetElemCount

◆ commsetNodeCount

◆ dbRealWordSize

◆ edgeCount

◆ elemCmapElemCnts

◆ elemCmapIds

◆ exodusMode

◆ faceCount