IOSS 2.0
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Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
Ioexnl::BaseDatabaseIO Class Referenceabstract

#include <Ioexnl_BaseDatabaseIO.h>

Inheritance diagram for Ioexnl::BaseDatabaseIO:
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Collaboration diagram for Ioexnl::BaseDatabaseIO:
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Public Member Functions

 BaseDatabaseIO (Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props)
 
IOSS_NODISCARD std::string get_format () const override
 
IOSS_NODISCARD unsigned entity_field_support () const override
 
- Public Member Functions inherited from Ioss::DatabaseIO
 DatabaseIO ()=delete
 
 DatabaseIO (const DatabaseIO &)=delete
 
 DatabaseIO (DatabaseIO &&)=delete
 
DatabaseIO & operator= (const DatabaseIO &)=delete
 
DatabaseIO & operator= (DatabaseIO &&)=delete
 
virtual ~DatabaseIO ()
 
IOSS_NODISCARD bool ok (bool write_message=false, std::string *error_message=nullptr, int *bad_count=nullptr) const
 Check to see if database state is OK.
 
IOSS_NODISCARD bool using_parallel_io () const
 
IOSS_NODISCARD int64_t node_global_to_local (int64_t global, bool must_exist) const
 Get the local (process-specific) node number corresponding to a global node number.
 
IOSS_NODISCARD int64_t element_global_to_local (int64_t global) const
 
virtual IOSS_NODISCARD bool node_major () const
 
void release_memory ()
 
virtual void finalize_database () const
 
void set_pfs_name (const std::string &name) const
 
IOSS_NODISCARD std::string get_pfs_name () const
 
void set_dw_name (const std::string &name) const
 this will be the name in BB namespace
 
IOSS_NODISCARD std::string get_dw_name () const
 
IOSS_NODISCARD std::string get_dw_path () const
 We call this ONLY after we assure that using_dw() is TRUE.
 
void check_set_dw () const
 
IOSS_NODISCARD bool using_dw () const
 
IOSS_NODISCARD std::string get_filename () const
 Get the file name associated with the database.
 
IOSS_NODISCARD const std::string & decoded_filename () const
 Get a file-per-processor filename associated with the database.
 
IOSS_NODISCARD bool is_input () const
 Determine whether the database is an input database.
 
IOSS_NODISCARD Ioss::DatabaseUsage usage () const
 Get the Ioss::DatabaseUsage type of the database.
 
virtual IOSS_NODISCARD bool needs_shared_node_information () const
 Determine whether the database needs information about process ownership of nodes.
 
IOSS_NODISCARD Ioss::IfDatabaseExistsBehavior open_create_behavior () const
 
void set_region (Region *region)
 
void open_dw (const std::string &filename) const
 If we are planning to use BB(aka Burst Buffer) service, we will call simple C API provided by Cray DataWarp module.
 
void close_dw () const
 Function which invokes stageout from BB to Disk, prior to completion of final close.
 
void openDatabase () const
 
void closeDatabase () const
 
void flush_database () const
 
void reset_database ()
 
bool open_internal_change_set (const std::string &set_name)
 If a database type supports internal change sets and if the database contains internal change sets, open the specified set.
 
bool create_internal_change_set (const std::string &set_name)
 If a database type supports internal change sets, create the specified set.
 
int num_internal_change_set ()
 If a database type supports internal change sets, and if the database contains internal change sets, return the number of change sets.
 
bool open_internal_change_set (int set_index)
 If a database type supports internal change sets, open the change set specified [zero-based] index.
 
Ioss::NameList internal_change_set_describe (bool return_full_names=false)
 If a database type supports internal change sets, return a list of set names.
 
bool supports_internal_change_set ()
 Checks if a database type supports internal change sets.
 
virtual IOSS_NODISCARD std::string get_internal_change_set_name () const
 
bool begin (Ioss::State state)
 Set the database to the given State.
 
bool end (Ioss::State state)
 Return the database to STATE_CLOSED.
 
bool begin_state (int state, double time)
 
bool end_state (int state, double time)
 
void read_meta_data ()
 
void get_step_times ()
 
std::vector< double > get_db_step_times ()
 Return the list of timesteps in the database contingent on certain controlling properties.
 
virtual IOSS_NODISCARD bool internal_edges_available () const
 
virtual IOSS_NODISCARD bool internal_faces_available () const
 
IOSS_NODISCARD const Ioss::NameList & get_information_records () const
 Get all information records (informative strings) for the database.
 
void add_information_records (const Ioss::NameList &info)
 Add multiple information records (informative strings) to the database.
 
void add_information_record (const std::string &info)
 Add an information record (an informative string) to the database.
 
IOSS_NODISCARD const Ioss::NameList & get_qa_records () const
 Get all QA records, each of which consists of 4 strings, from the database.
 
void add_qa_record (const std::string &code, const std::string &code_qa, const std::string &date, const std::string &time)
 Add a QA record, which consists of 4 strings, to the database.
 
IOSS_NODISCARD bool get_logging () const
 
void set_logging (bool on_off)
 
IOSS_NODISCARD bool get_nan_detection () const
 
void set_nan_detection (bool on_off)
 
template<typename T >
int64_t get_field (const T *reg, const Field &field, void *data, size_t data_size) const
 
template<typename T >
int64_t put_field (const T *reg, const Field &field, void *data, size_t data_size) const
 
template<typename T >
int64_t get_zc_field (const T *reg, const Field &field, void **data, size_t *data_size) const
 
IOSS_NODISCARD bool is_parallel_consistent () const
 
void set_parallel_consistency (bool on_off)
 
IOSS_NODISCARD bool get_use_generic_canonical_name () const
 
void set_use_generic_canonical_name (bool yes_no)
 
IOSS_NODISCARD bool ignore_database_names () const
 
void ignore_database_names (bool yes_no)
 
IOSS_NODISCARD bool get_ignore_realn_fields () const
 
void set_ignore_realn_fields (bool yes_no)
 
IOSS_NODISCARD std::string get_component_name (const Ioss::Field &field, Ioss::Field::InOut in_out, int component) const
 
IOSS_NODISCARD char get_field_separator () const
 
IOSS_NODISCARD bool get_field_recognition () const
 
IOSS_NODISCARD bool get_field_strip_trailing_ () const
 
void set_field_separator (char separator)
 Set the character used to separate a field suffix from the field basename when recognizing vector, tensor fields.
 
void set_field_recognition (bool yes_no)
 
void set_field_strip_trailing_ (bool yes_no)
 
IOSS_NODISCARD DuplicateFieldBehavior get_duplicate_field_behavior () const
 
void set_lower_case_variable_names (bool true_false) const
 
void set_surface_split_type (Ioss::SurfaceSplitType split_type)
 
IOSS_NODISCARD Ioss::SurfaceSplitType get_surface_split_type () const
 
void set_block_omissions (const Ioss::NameList &omissions, const Ioss::NameList &inclusions={})
 
void set_assembly_omissions (const Ioss::NameList &omissions, const Ioss::NameList &inclusions={})
 
void get_block_adjacencies (const Ioss::ElementBlock *eb, Ioss::NameList &block_adjacency) const
 
void compute_block_membership (Ioss::SideBlock *efblock, Ioss::NameList &block_membership) const
 
IOSS_NODISCARD AxisAlignedBoundingBox get_bounding_box (const Ioss::NodeBlock *nb) const
 
IOSS_NODISCARD AxisAlignedBoundingBox get_bounding_box (const Ioss::ElementBlock *eb) const
 
IOSS_NODISCARD AxisAlignedBoundingBox get_bounding_box (const Ioss::StructuredBlock *sb) const
 
IOSS_NODISCARD int int_byte_size_api () const
 Returns 4 or 8.
 
IOSS_NODISCARD Ioss::DataSize int_byte_size_data_size () const
 
IOSS_NODISCARD Region * get_region () const
 
void set_cycle_count (int count) const
 
IOSS_NODISCARD int get_cycle_count () const
 
void set_overlay_count (int count) const
 
IOSS_NODISCARD int get_overlay_count () const
 
void set_file_per_state (bool yes_no) const
 
IOSS_NODISCARD bool get_file_per_state () const
 
void set_time_scale_factor (double factor)
 
IOSS_NODISCARD const Ioss::ParallelUtils & util () const
 
IOSS_NODISCARD const Ioss::PropertyManager & get_property_manager () const
 
IOSS_NODISCARD int parallel_rank () const
 Get the processor that this mesh database is on.
 
IOSS_NODISCARD int parallel_size () const
 
IOSS_NODISCARD bool is_parallel () const
 
void progress (const std::string &output) const
 
virtual std::vector< size_t > get_entity_field_data (const std::string &field_name, const std::vector< Ioss::ElementBlock * > &elem_blocks, void *data, size_t data_size) const
 
template<>
void create_group (EntityType type, const std::string &, const Ioss::NameList &group_spec, const SideSet *)
 

Protected Member Functions

IOSS_NODISCARD bool ok_nl (bool write_message=false, std::string *error_message=nullptr, int *bad_count=nullptr) const override
 
IOSS_NODISCARD bool begin_nl (Ioss::State state) override
 
IOSS_NODISCARD bool end_nl (Ioss::State state) override
 
void open_state_file (int state)
 
bool begin_state_nl (int state, double time) override
 
bool end_state_nl (int state, double time) override
 
void get_step_times_nl () override=0
 
IOSS_NODISCARD int maximum_symbol_length () const override
 Get the length of the longest name in the database file.
 
void set_maximum_symbol_length (int requested_symbol_size) override
 
size_t handle_block_ids (const Ioss::EntityBlock *eb, ex_entity_type map_type, Ioss::Map &entity_map, void *ids, size_t num_to_get, size_t offset) const
 
void compute_block_membership_nl (Ioss::SideBlock *efblock, Ioss::NameList &block_membership) const override
 
IOSS_NODISCARD int int_byte_size_db () const override
 
void set_int_byte_size_api (Ioss::DataSize size) const override
 Returns 4 or 8.
 
int64_t put_field_internal (const Ioss::Region *reg, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::StructuredBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::SideBlock *fb, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::NodeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::FaceSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::ElementSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::SideSet *fs, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::CommSet *cs, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::Assembly *as, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
int64_t put_field_internal (const Ioss::Blob *blob, const Ioss::Field &field, void *data, size_t data_size) const override=0
 
virtual void write_meta_data (Ioss::IfDatabaseExistsBehavior behavior)=0
 
void write_results_metadata (bool gather_data, Ioss::IfDatabaseExistsBehavior behavior)
 
void openDatabase_nl () const override
 
void closeDatabase_nl () const override
 
IOSS_NODISCARD int get_file_pointer () const override=0
 
virtual int free_file_pointer () const
 
virtual bool handle_output_file (bool write_message, std::string *error_msg, int *bad_count, bool overwrite, bool abort_if_error) const =0
 
IOSS_NODISCARD int get_current_state () const
 
void put_qa ()
 
void put_info ()
 
template<typename T >
void internal_gather_results_metadata (ex_entity_type type, std::vector< T * > entities)
 
void generate_sideset_truth_table ()
 
void output_results_names (ex_entity_type type, VariableNameMap &variables, bool reduction) const
 
int gather_names (VariableNameMap &variables, const Ioss::GroupingEntity *ge, int index, bool reduction)
 
void get_nodeblocks ()
 
void get_assemblies ()
 
void get_blobs ()
 
void update_block_omissions_from_assemblies ()
 
void add_attribute_fields (Ioss::GroupingEntity *block, int attribute_count, const std::string &type)
 
void common_write_metadata (Ioss::IfDatabaseExistsBehavior behavior)
 
void output_other_metadata ()
 
int64_t internal_add_results_fields (ex_entity_type type, Ioss::GroupingEntity *entity, int64_t position, int64_t block_count, Ioss::IntVector &truth_table, Ioexnl::VariableNameMap &variables)
 
int64_t add_results_fields (Ioss::GroupingEntity *entity, int64_t position=0)
 
int64_t add_reduction_results_fields (Ioss::GroupingEntity *entity)
 
void add_mesh_reduction_fields (int64_t id, Ioss::GroupingEntity *entity)
 
void add_region_fields ()
 
void store_reduction_field (const Ioss::Field &field, const Ioss::GroupingEntity *ge, void *variables) const
 
void get_reduction_field (const Ioss::Field &field, const Ioss::GroupingEntity *ge, void *variables) const
 
void write_reduction_fields () const
 
void read_reduction_fields () const
 
IOSS_NODISCARD int get_database_step (int global_step) const
 
void flush_database_nl () const override
 
void finalize_write (int state, double sim_time)
 
- Protected Member Functions inherited from Ioss::DatabaseIO
 DatabaseIO (Region *region, std::string filename, Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props)
 
void set_common_side_topology () const
 
template<typename T >
void create_groups (const std::string &property_name, EntityType type, const std::string &type_name, const T *set_type)
 
template<typename T >
void create_group (EntityType type, const std::string &type_name, const Ioss::NameList &group_spec, const T *set_type)
 
void handle_groups ()
 
void check_side_topology () const
 
virtual void release_memory_nl ()
 
virtual void reset_database_nl ()
 

Protected Attributes

int m_exodusFilePtr {-1}
 
int m_exodusBasePtr {-1}
 
std::string m_groupName
 
EntityIdSet ids_
 
int exodusMode {EX_CLOBBER}
 
int dbRealWordSize {8}
 
int maximumNameLength {32}
 
int spatialDimension {0}
 
int64_t edgeCount {0}
 
int64_t faceCount {0}
 
std::map< ex_entity_type, int > m_groupCount
 
Ioss::Int64Vector nodeCmapIds
 
Ioss::Int64Vector nodeCmapNodeCnts
 
Ioss::Int64Vector elemCmapIds
 
Ioss::Int64Vector elemCmapElemCnts
 
int64_t commsetNodeCount {0}
 
int64_t commsetElemCount {0}
 
std::map< ex_entity_type, Ioss::IntVector > m_truthTable
 
std::map< ex_entity_type, VariableNameMap > m_variables
 
std::map< ex_entity_type, VariableNameMap > m_reductionVariables
 
std::map< ex_entity_type, std::map< int64_t, ValueContainer > > m_reductionValues
 
std::vector< unsigned char > nodeConnectivityStatus
 
std::map< std::string, Ioss::Int64Vector > activeNodeSetNodesIndex
 
time_t timeLastFlush {0}
 
int flushInterval {-1}
 
bool fileExists {false}
 
bool minimizeOpenFiles {false}
 
bool blockAdjacenciesCalculated {false}
 
bool nodeConnectivityStatusCalculated
 
- Protected Attributes inherited from Ioss::DatabaseIO
Ioss::PropertyManager properties
 
ElementTopology * commonSideTopology {nullptr}
 
std::string originalDBFilename {}
 
std::string DBFilename {}
 
std::string decodedFilename {}
 
std::string bbName {}
 
std::string pfsName {}
 
std::string dwPath {}
 
Ioss::State dbState {STATE_INVALID}
 
int myProcessor {0}
 number of processor this database is for
 
int64_t nodeCount {0}
 
int64_t elementCount {0}
 
TopoContainer sideTopology {}
 Used to speed up faceblock/edgeblock calculations.
 
int cycleCount {0}
 
int overlayCount {0}
 
double timeScaleFactor {1.0}
 
Ioss::SurfaceSplitType splitType {SPLIT_BY_TOPOLOGIES}
 
Ioss::DatabaseUsage dbUsage {}
 
Ioss::DataSize dbIntSizeAPI {USE_INT32_API}
 
bool filePerState {false}
 
bool usingDataWarp {false}
 
bool isParallel {false}
 true if running in parallel
 
bool lowerCaseVariableNames {true}
 
bool usingParallelIO {false}
 
Ioss::NameList blockOmissions {}
 
Ioss::NameList blockInclusions {}
 
Ioss::NameList assemblyOmissions {}
 
Ioss::NameList assemblyInclusions {}
 
Ioss::NameList informationRecords {}
 
Ioss::NameList qaRecords {}
 
Ioss::Map nodeMap {"node", DBFilename, myProcessor}
 
Ioss::Map edgeMap {"edge", DBFilename, myProcessor}
 
Ioss::Map faceMap {"face", DBFilename, myProcessor}
 
Ioss::Map elemMap {"element", DBFilename, myProcessor}
 
std::vector< std::vector< bool > > blockAdjacency
 

Constructor & Destructor Documentation

◆ BaseDatabaseIO()

Ioexnl::BaseDatabaseIO::BaseDatabaseIO ( Ioss::Region * region,
const std::string & filename,
Ioss::DatabaseUsage db_usage,
Ioss_MPI_Comm communicator,
const Ioss::PropertyManager & props )

Member Function Documentation

◆ add_attribute_fields()

void Ioexnl::BaseDatabaseIO::add_attribute_fields ( Ioss::GroupingEntity * block,
int attribute_count,
const std::string & type )
protected

◆ add_mesh_reduction_fields()

void Ioexnl::BaseDatabaseIO::add_mesh_reduction_fields ( int64_t id,
Ioss::GroupingEntity * entity )
protected

◆ add_reduction_results_fields()

int64_t Ioexnl::BaseDatabaseIO::add_reduction_results_fields ( Ioss::GroupingEntity * entity)
protected

◆ add_region_fields()

void Ioexnl::BaseDatabaseIO::add_region_fields ( )
protected

◆ add_results_fields()

int64_t Ioexnl::BaseDatabaseIO::add_results_fields ( Ioss::GroupingEntity * entity,
int64_t position = 0 )
protected

◆ begin_nl()

bool Ioexnl::BaseDatabaseIO::begin_nl ( Ioss::State state)
overrideprotectedvirtual

Implements Ioss::DatabaseIO.

◆ begin_state_nl()

bool Ioexnl::BaseDatabaseIO::begin_state_nl ( int state,
double time )
overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ closeDatabase_nl()

void Ioexnl::BaseDatabaseIO::closeDatabase_nl ( ) const
inlineoverrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ common_write_metadata()

void Ioexnl::BaseDatabaseIO::common_write_metadata ( Ioss::IfDatabaseExistsBehavior behavior)
protected

◆ compute_block_membership_nl()

void Ioexnl::BaseDatabaseIO::compute_block_membership_nl ( Ioss::SideBlock * efblock,
Ioss::NameList & block_membership ) const
overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ end_nl()

bool Ioexnl::BaseDatabaseIO::end_nl ( Ioss::State state)
overrideprotectedvirtual

Implements Ioss::DatabaseIO.

◆ end_state_nl()

bool Ioexnl::BaseDatabaseIO::end_state_nl ( int state,
double time )
overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ entity_field_support()

unsigned Ioexnl::BaseDatabaseIO::entity_field_support ( ) const
overridevirtual

Implements Ioss::DatabaseIO.

◆ finalize_write()

void Ioexnl::BaseDatabaseIO::finalize_write ( int state,
double sim_time )
protected

◆ flush_database_nl()

void Ioexnl::BaseDatabaseIO::flush_database_nl ( ) const
overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ free_file_pointer()

int Ioexnl::BaseDatabaseIO::free_file_pointer ( ) const
protectedvirtual

◆ gather_names()

int Ioexnl::BaseDatabaseIO::gather_names ( VariableNameMap & variables,
const Ioss::GroupingEntity * ge,
int index,
bool reduction )
protected

◆ generate_sideset_truth_table()

void Ioexnl::BaseDatabaseIO::generate_sideset_truth_table ( )
protected

◆ get_assemblies()

void Ioexnl::BaseDatabaseIO::get_assemblies ( )
protected

◆ get_blobs()

void Ioexnl::BaseDatabaseIO::get_blobs ( )
protected

◆ get_current_state()

int Ioexnl::BaseDatabaseIO::get_current_state ( ) const
protected

◆ get_database_step()

int Ioexnl::BaseDatabaseIO::get_database_step ( int global_step) const
protected

◆ get_file_pointer()

int Ioexnl::BaseDatabaseIO::get_file_pointer ( ) const
overrideprotectedpure virtual

For the database types that support it, return an integer handle through which a client can directly access the underlying file. Please use sparingly and with discretion. Basically, a kluge

Reimplemented from Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ get_format()

IOSS_NODISCARD std::string Ioexnl::BaseDatabaseIO::get_format ( ) const
inlineoverridevirtual

Return a string specifying underlying format of database (exodus, cgns, ...)

Implements Ioss::DatabaseIO.

◆ get_nodeblocks()

void Ioexnl::BaseDatabaseIO::get_nodeblocks ( )
protected

◆ get_reduction_field()

void Ioexnl::BaseDatabaseIO::get_reduction_field ( const Ioss::Field & field,
const Ioss::GroupingEntity * ge,
void * variables ) const
protected

◆ get_step_times_nl()

void Ioexnl::BaseDatabaseIO::get_step_times_nl ( )
overrideprotectedpure virtual

Reimplemented from Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ handle_block_ids()

size_t Ioexnl::BaseDatabaseIO::handle_block_ids ( const Ioss::EntityBlock * eb,
ex_entity_type map_type,
Ioss::Map & entity_map,
void * ids,
size_t num_to_get,
size_t offset ) const
protected

NOTE: "element" is generic for "element", "face", or "edge"

There are two modes we need to support in this routine:

  1. Initial definition of element map (local->global) and elemMap.reverse (global->local).
  2. Redefinition of element map via 'reordering' of the original map when the elements on this processor are the same, but their order is changed.

So, there will be two maps the 'elemMap.map' map is a 'direct lookup' map which maps current local position to global id and the 'elemMap.reverse' is an associative lookup which maps the global id to 'original local'. There is also a 'elemMap.reorder' which is direct lookup and maps current local position to original local.

The ids coming in are the global ids; their position is the local id -1 (That is, data[0] contains the global id of local element 1 in this element block). The 'model-local' id is given by eb_offset + 1 + position:

int local_position = elemMap.reverse[ElementMap[i+1]] (the elemMap.map and elemMap.reverse are 1-based)

But, this assumes 1..numel elements are being output at the same time; we are actually outputting a blocks worth of elements at a time, so we need to consider the block offsets. So... local-in-block position 'i' is index 'eb_offset+i' in 'elemMap.map' and the 'local_position' within the element blocks data arrays is 'local_position-eb_offset'. With this, the position within the data array of this element block is:

int eb_position = elemMap.reverse[elemMap.map[eb_offset+i+1]]-eb_offset-1

To determine which map to update on a call to this function, we use the following heuristics: – If the database state is 'Ioss::STATE_MODEL:', then update the 'elemMap.reverse'. – If the database state is not Ioss::STATE_MODEL, then leave the 'elemMap.reverse' alone since it corresponds to the information already written to the database. [May want to add a Ioss::STATE_REDEFINE_MODEL] – Always update elemMap.map to match the passed in 'ids' array.

NOTE: the maps are built an element block at a time... NOTE: The mapping is done on TRANSIENT fields only; MODEL fields should be in the original order...

◆ handle_output_file()

virtual bool Ioexnl::BaseDatabaseIO::handle_output_file ( bool write_message,
std::string * error_msg,
int * bad_count,
bool overwrite,
bool abort_if_error ) const
protectedpure virtual

Implemented in Ioexnl::DatabaseIO.

◆ int_byte_size_db()

int Ioexnl::BaseDatabaseIO::int_byte_size_db ( ) const
overrideprotectedvirtual

Implements Ioss::DatabaseIO.

◆ internal_add_results_fields()

int64_t Ioexnl::BaseDatabaseIO::internal_add_results_fields ( ex_entity_type type,
Ioss::GroupingEntity * entity,
int64_t position,
int64_t block_count,
Ioss::IntVector & truth_table,
Ioexnl::VariableNameMap & variables )
protected

◆ internal_gather_results_metadata()

template<typename T >
void Ioexnl::BaseDatabaseIO::internal_gather_results_metadata ( ex_entity_type type,
std::vector< T * > entities )
protected

◆ maximum_symbol_length()

IOSS_NODISCARD int Ioexnl::BaseDatabaseIO::maximum_symbol_length ( ) const
inlineoverrideprotectedvirtual

Get the length of the longest name in the database file.

Returns
The length, or 0 for unlimited.

Reimplemented from Ioss::DatabaseIO.

◆ ok_nl()

bool Ioexnl::BaseDatabaseIO::ok_nl ( bool write_message = false,
std::string * error_message = nullptr,
int * bad_count = nullptr ) const
overrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ open_state_file()

void Ioexnl::BaseDatabaseIO::open_state_file ( int state)
protected

◆ openDatabase_nl()

void Ioexnl::BaseDatabaseIO::openDatabase_nl ( ) const
inlineoverrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ output_other_metadata()

void Ioexnl::BaseDatabaseIO::output_other_metadata ( )
protected

◆ output_results_names()

void Ioexnl::BaseDatabaseIO::output_results_names ( ex_entity_type type,
VariableNameMap & variables,
bool reduction ) const
protected

◆ put_field_internal() [1/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::Assembly * as,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [2/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::Blob * blob,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [3/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::CommSet * cs,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [4/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::EdgeBlock * nb,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [5/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::EdgeSet * ns,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [6/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::ElementBlock * eb,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [7/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::ElementSet * ns,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [8/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::FaceBlock * nb,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [9/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::FaceSet * ns,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [10/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::NodeBlock * nb,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [11/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::NodeSet * ns,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [12/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::Region * reg,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [13/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::SideBlock * fb,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [14/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::SideSet * fs,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_field_internal() [15/15]

int64_t Ioexnl::BaseDatabaseIO::put_field_internal ( const Ioss::StructuredBlock * sb,
const Ioss::Field & field,
void * data,
size_t data_size ) const
overrideprotectedpure virtual

Implements Ioss::DatabaseIO.

Implemented in Ioexnl::DatabaseIO.

◆ put_info()

void Ioexnl::BaseDatabaseIO::put_info ( )
protected

◆ put_qa()

void Ioexnl::BaseDatabaseIO::put_qa ( )
protected

◆ read_reduction_fields()

void Ioexnl::BaseDatabaseIO::read_reduction_fields ( ) const
protected

◆ set_int_byte_size_api()

void Ioexnl::BaseDatabaseIO::set_int_byte_size_api ( Ioss::DataSize size) const
overrideprotectedvirtual

Returns 4 or 8.

Set the number of bytes used to represent an integer.

Parameters
[in]sizeThe number of bytes. This is 4 for INT32 or 8 for INT64.

Reimplemented from Ioss::DatabaseIO.

◆ set_maximum_symbol_length()

void Ioexnl::BaseDatabaseIO::set_maximum_symbol_length ( int requested_symbol_size)
inlineoverrideprotectedvirtual

Reimplemented from Ioss::DatabaseIO.

◆ store_reduction_field()

void Ioexnl::BaseDatabaseIO::store_reduction_field ( const Ioss::Field & field,
const Ioss::GroupingEntity * ge,
void * variables ) const
protected

◆ update_block_omissions_from_assemblies()

void Ioexnl::BaseDatabaseIO::update_block_omissions_from_assemblies ( )
protected

◆ write_meta_data()

virtual void Ioexnl::BaseDatabaseIO::write_meta_data ( Ioss::IfDatabaseExistsBehavior behavior)
protectedpure virtual

Implemented in Ioexnl::DatabaseIO.

◆ write_reduction_fields()

void Ioexnl::BaseDatabaseIO::write_reduction_fields ( ) const
protected

◆ write_results_metadata()

void Ioexnl::BaseDatabaseIO::write_results_metadata ( bool gather_data,
Ioss::IfDatabaseExistsBehavior behavior )
protected

Member Data Documentation

◆ activeNodeSetNodesIndex

std::map<std::string, Ioss::Int64Vector> Ioexnl::BaseDatabaseIO::activeNodeSetNodesIndex
mutableprotected

◆ blockAdjacenciesCalculated

bool Ioexnl::BaseDatabaseIO::blockAdjacenciesCalculated {false}
mutableprotected

◆ commsetElemCount

int64_t Ioexnl::BaseDatabaseIO::commsetElemCount {0}
protected

◆ commsetNodeCount

int64_t Ioexnl::BaseDatabaseIO::commsetNodeCount {0}
protected

◆ dbRealWordSize

int Ioexnl::BaseDatabaseIO::dbRealWordSize {8}
mutableprotected

◆ edgeCount

int64_t Ioexnl::BaseDatabaseIO::edgeCount {0}
protected

◆ elemCmapElemCnts

Ioss::Int64Vector Ioexnl::BaseDatabaseIO::elemCmapElemCnts
protected

◆ elemCmapIds

Ioss::Int64Vector Ioexnl::BaseDatabaseIO::elemCmapIds
protected

◆ exodusMode

int Ioexnl::BaseDatabaseIO::exodusMode {EX_CLOBBER}
mutableprotected

◆ faceCount

int64_t Ioexnl::BaseDatabaseIO::faceCount {0}
protected

◆ fileExists

bool Ioexnl::BaseDatabaseIO::fileExists {false}
mutableprotected

◆ flushInterval

int Ioexnl::BaseDatabaseIO::flushInterval {-1}
protected

◆ ids_

EntityIdSet Ioexnl::BaseDatabaseIO::ids_
mutableprotected

◆ m_exodusBasePtr

int Ioexnl::BaseDatabaseIO::m_exodusBasePtr {-1}
mutableprotected

◆ m_exodusFilePtr

int Ioexnl::BaseDatabaseIO::m_exodusFilePtr {-1}
mutableprotected

◆ m_groupCount

std::map<ex_entity_type, int> Ioexnl::BaseDatabaseIO::m_groupCount
mutableprotected

◆ m_groupName

std::string Ioexnl::BaseDatabaseIO::m_groupName
mutableprotected

◆ m_reductionValues

std::map<ex_entity_type, std::map<int64_t, ValueContainer> > Ioexnl::BaseDatabaseIO::m_reductionValues
mutableprotected

◆ m_reductionVariables

std::map<ex_entity_type, VariableNameMap> Ioexnl::BaseDatabaseIO::m_reductionVariables
mutableprotected

◆ m_truthTable

std::map<ex_entity_type, Ioss::IntVector> Ioexnl::BaseDatabaseIO::m_truthTable
mutableprotected

◆ m_variables

std::map<ex_entity_type, VariableNameMap> Ioexnl::BaseDatabaseIO::m_variables
mutableprotected

◆ maximumNameLength

int Ioexnl::BaseDatabaseIO::maximumNameLength {32}
mutableprotected

◆ minimizeOpenFiles

bool Ioexnl::BaseDatabaseIO::minimizeOpenFiles {false}
mutableprotected

◆ nodeCmapIds

Ioss::Int64Vector Ioexnl::BaseDatabaseIO::nodeCmapIds
protected

◆ nodeCmapNodeCnts

Ioss::Int64Vector Ioexnl::BaseDatabaseIO::nodeCmapNodeCnts
protected

◆ nodeConnectivityStatus

std::vector<unsigned char> Ioexnl::BaseDatabaseIO::nodeConnectivityStatus
mutableprotected

◆ nodeConnectivityStatusCalculated

bool Ioexnl::BaseDatabaseIO::nodeConnectivityStatusCalculated
mutableprotected
Initial value:
{
false}

◆ spatialDimension

int Ioexnl::BaseDatabaseIO::spatialDimension {0}
protected

◆ timeLastFlush

time_t Ioexnl::BaseDatabaseIO::timeLastFlush {0}
protected
The documentation for this class was generated from the following files: