RetSynth Modules

• RetSynth package
  • Subpackages
    • Database module
      • Submodules
        • Database.initialize_database
        • Database.query
        • Database.build_ATLAS_db
        • Database.build_kbase_db
        • Database.build_modelseed
        • Database.build_user_rxns_db
        • Database.build_KEGG_db
        • Database.build_metacyc_db
        • Database.build_SPRESI_db
        • Database.build_MINE_db
        • Database.remove_duplicate_cpds
    • FBA module
      • Submodules
        • FBA.build_model
        • FBA.optimize_target
        • FBA.compare_results
        • FBA.compareKO_results
        • FBA.retrieve_producable_mets
        • FBA.generating_model.generate_model_components
    • Parser module
      • Submodules
        • Parser.compute_tanimoto
        • Parser.generate_output
        • Parser.read_targets
        • Parser.structure_similarity
    • ShortestPath module
      • Submodules
        • ShortestPath.constraints
        • ShortestPath.extractinfo
        • ShortestPath.integerprogram_pulp
    • Visualization_graphviz package
      • Submodules
        • Visualization_graphviz.SP_Graph_dot
        • Visualization_graphviz.reaction_files
        • Visualization_graphviz.chempyutilgraph_edit
    • Visualization_chemdraw package
      • Submodules
        • Visualization_chemdraw.cdxml_editor
        • Visualization_chemdraw.cdxml_elements
        • Visualization_chemdraw.reaction_files
        • Visualization_chemdraw.exclude_cpds
  • RetSynth modules