RetSynth package

Subpackages

• Database module
  • Submodules
    • Database.initialize_database
    • Database.query
    • Database.build_ATLAS_db
    • Database.build_kbase_db
    • Database.build_modelseed
    • Database.build_user_rxns_db
    • Database.build_KEGG_db
    • Database.build_metacyc_db
    • Database.build_SPRESI_db
    • Database.build_MINE_db
    • Database.remove_duplicate_cpds
• FBA module
  • Submodules
    • FBA.build_model
    • FBA.optimize_target
    • FBA.compare_results
    • FBA.compareKO_results
    • FBA.retrieve_producable_mets
    • FBA.generating_model.generate_model_components
• Parser module
  • Submodules
    • Parser.compute_tanimoto
    • Parser.generate_output
    • Parser.read_targets
    • Parser.structure_similarity
• ShortestPath module
  • Submodules
    • ShortestPath.constraints
    • ShortestPath.extractinfo
    • ShortestPath.integerprogram_pulp
• Visualization_graphviz package
  • Submodules
    • Visualization_graphviz.SP_Graph_dot
    • Visualization_graphviz.reaction_files
    • Visualization_graphviz.chempyutilgraph_edit
• Visualization_chemdraw package
  • Submodules
    • Visualization_chemdraw.cdxml_editor
    • Visualization_chemdraw.cdxml_elements
    • Visualization_chemdraw.reaction_files
    • Visualization_chemdraw.exclude_cpds

RetSynth modules