#include <Ioad_DatabaseIO.h>

Inheritance diagram for Ioad::DatabaseIO:

Collaboration diagram for Ioad::DatabaseIO:

Classes
struct	BlockInfoType

struct	FieldInfoType

Public Member Functions
	DatabaseIO (Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props)

std::string	get_format () const override

bool	begin_nl (Ioss::State state) override

bool	end_nl (Ioss::State state) override

unsigned	entity_field_support () const override

int	int_byte_size_db () const override

Public Member Functions inherited from Ioss::DatabaseIO
	DatabaseIO ()=delete

	DatabaseIO (const DatabaseIO &)=delete

	DatabaseIO (DatabaseIO &&)=delete

DatabaseIO &	operator= (const DatabaseIO &)=delete

DatabaseIO &	operator= (DatabaseIO &&)=delete

virtual	~DatabaseIO ()

IOSS_NODISCARD bool	ok (bool write_message=false, std::string error_message=nullptr, int bad_count=nullptr) const
	Check to see if database state is OK.

IOSS_NODISCARD bool	using_parallel_io () const

IOSS_NODISCARD int64_t	node_global_to_local (int64_t global, bool must_exist) const
	Get the local (process-specific) node number corresponding to a global node number.

IOSS_NODISCARD int64_t	element_global_to_local (int64_t global) const

virtual IOSS_NODISCARD bool	node_major () const

void	release_memory ()

virtual void	finalize_database () const

void	set_pfs_name (const std::string &name) const

IOSS_NODISCARD std::string	get_pfs_name () const

void	set_dw_name (const std::string &name) const
	this will be the name in BB namespace

IOSS_NODISCARD std::string	get_dw_name () const

IOSS_NODISCARD std::string	get_dw_path () const
	We call this ONLY after we assure that using_dw() is TRUE.

void	check_set_dw () const

IOSS_NODISCARD bool	using_dw () const

IOSS_NODISCARD std::string	get_filename () const
	Get the file name associated with the database.

virtual IOSS_NODISCARD int	get_file_pointer () const

IOSS_NODISCARD const std::string &	decoded_filename () const
	Get a file-per-processor filename associated with the database.

IOSS_NODISCARD bool	is_input () const
	Determine whether the database is an input database.

IOSS_NODISCARD Ioss::DatabaseUsage	usage () const
	Get the Ioss::DatabaseUsage type of the database.

virtual IOSS_NODISCARD bool	needs_shared_node_information () const
	Determine whether the database needs information about process ownership of nodes.

IOSS_NODISCARD Ioss::IfDatabaseExistsBehavior	open_create_behavior () const

void	set_region (Region *region)

void	open_dw (const std::string &filename) const
	If we are planning to use BB(aka Burst Buffer) service, we will call simple C API provided by Cray DataWarp module.

void	close_dw () const
	Function which invokes stageout from BB to Disk, prior to completion of final close.

void	openDatabase () const

void	closeDatabase () const

void	flush_database () const

void	reset_database ()

bool	open_internal_change_set (const std::string &set_name)
	If a database type supports internal change sets and if the database contains internal change sets, open the specified set.

bool	create_internal_change_set (const std::string &set_name)
	If a database type supports internal change sets, create the specified set.

int	num_internal_change_set ()
	If a database type supports internal change sets, and if the database contains internal change sets, return the number of change sets.

bool	open_internal_change_set (int set_index)
	If a database type supports internal change sets, open the change set specified [zero-based] index.

Ioss::NameList	internal_change_set_describe (bool return_full_names=false)
	If a database type supports internal change sets, return a list of set names.

bool	supports_internal_change_set ()
	Checks if a database type supports internal change sets.

virtual IOSS_NODISCARD std::string	get_internal_change_set_name () const

bool	begin (Ioss::State state)
	Set the database to the given State.

bool	end (Ioss::State state)
	Return the database to STATE_CLOSED.

bool	begin_state (int state, double time)

bool	end_state (int state, double time)

void	read_meta_data ()

void	get_step_times ()

std::vector< double >	get_db_step_times ()
	Return the list of timesteps in the database contingent on certain controlling properties.

virtual IOSS_NODISCARD bool	internal_edges_available () const

virtual IOSS_NODISCARD bool	internal_faces_available () const

IOSS_NODISCARD const Ioss::NameList &	get_information_records () const
	Get all information records (informative strings) for the database.

void	add_information_records (const Ioss::NameList &info)
	Add multiple information records (informative strings) to the database.

void	add_information_record (const std::string &info)
	Add an information record (an informative string) to the database.

IOSS_NODISCARD const Ioss::NameList &	get_qa_records () const
	Get all QA records, each of which consists of 4 strings, from the database.

void	add_qa_record (const std::string &code, const std::string &code_qa, const std::string &date, const std::string &time)
	Add a QA record, which consists of 4 strings, to the database.

IOSS_NODISCARD bool	get_logging () const

void	set_logging (bool on_off)

IOSS_NODISCARD bool	get_nan_detection () const

void	set_nan_detection (bool on_off)

template<typename T >
int64_t	get_field (const T reg, const Field &field, void data, size_t data_size) const

template<typename T >
int64_t	put_field (const T reg, const Field &field, void data, size_t data_size) const

template<typename T >
int64_t	get_zc_field (const T reg, const Field &field, void data, size_t data_size) const

IOSS_NODISCARD bool	is_parallel_consistent () const

void	set_parallel_consistency (bool on_off)

IOSS_NODISCARD bool	get_use_generic_canonical_name () const

void	set_use_generic_canonical_name (bool yes_no)

IOSS_NODISCARD bool	ignore_database_names () const

void	ignore_database_names (bool yes_no)

IOSS_NODISCARD bool	get_ignore_realn_fields () const

void	set_ignore_realn_fields (bool yes_no)

virtual IOSS_NODISCARD int	maximum_symbol_length () const
	Get the length of the longest name in the database file.

virtual void	set_maximum_symbol_length (int)

IOSS_NODISCARD std::string	get_component_name (const Ioss::Field &field, Ioss::Field::InOut in_out, int component) const

IOSS_NODISCARD char	get_field_separator () const

IOSS_NODISCARD bool	get_field_recognition () const

IOSS_NODISCARD bool	get_field_strip_trailing_ () const

void	set_field_separator (char separator)
	Set the character used to separate a field suffix from the field basename when recognizing vector, tensor fields.

void	set_field_recognition (bool yes_no)

void	set_field_strip_trailing_ (bool yes_no)

IOSS_NODISCARD DuplicateFieldBehavior	get_duplicate_field_behavior () const

void	set_lower_case_variable_names (bool true_false) const

void	set_surface_split_type (Ioss::SurfaceSplitType split_type)

IOSS_NODISCARD Ioss::SurfaceSplitType	get_surface_split_type () const

void	set_block_omissions (const Ioss::NameList &omissions, const Ioss::NameList &inclusions={})

void	set_assembly_omissions (const Ioss::NameList &omissions, const Ioss::NameList &inclusions={})

void	get_block_adjacencies (const Ioss::ElementBlock *eb, Ioss::NameList &block_adjacency) const

void	compute_block_membership (Ioss::SideBlock *efblock, Ioss::NameList &block_membership) const

IOSS_NODISCARD AxisAlignedBoundingBox	get_bounding_box (const Ioss::NodeBlock *nb) const

IOSS_NODISCARD AxisAlignedBoundingBox	get_bounding_box (const Ioss::ElementBlock *eb) const

IOSS_NODISCARD AxisAlignedBoundingBox	get_bounding_box (const Ioss::StructuredBlock *sb) const

IOSS_NODISCARD int	int_byte_size_api () const
	Returns 4 or 8.

virtual void	set_int_byte_size_api (Ioss::DataSize size) const
	Returns 4 or 8.

IOSS_NODISCARD Ioss::DataSize	int_byte_size_data_size () const

IOSS_NODISCARD Region *	get_region () const

void	set_cycle_count (int count) const

IOSS_NODISCARD int	get_cycle_count () const

void	set_overlay_count (int count) const

IOSS_NODISCARD int	get_overlay_count () const

void	set_file_per_state (bool yes_no) const

IOSS_NODISCARD bool	get_file_per_state () const

void	set_time_scale_factor (double factor)

IOSS_NODISCARD const Ioss::ParallelUtils &	util () const

IOSS_NODISCARD const Ioss::PropertyManager &	get_property_manager () const

IOSS_NODISCARD int	parallel_rank () const
	Get the processor that this mesh database is on.

IOSS_NODISCARD int	parallel_size () const

IOSS_NODISCARD bool	is_parallel () const

void	progress (const std::string &output) const

virtual std::vector< size_t >	get_entity_field_data (const std::string &field_name, const std::vector< Ioss::ElementBlock * > &elem_blocks, void *data, size_t data_size) const

template<>
void	create_group (EntityType type, const std::string &, const Ioss::NameList &group_spec, const SideSet *)

Private Types
using	GlobalMapType = std::map<std::string, std::pair<std::string, std::string>>

using	EntityMapType = std::map<std::string, GlobalMapType>

using	FieldsMapType = std::map<std::string, EntityMapType>

template<typename T >
using	IsIossEntityBlock = typename std::enable_if_t<std::is_base_of_v<Ioss::EntityBlock, T>>

template<typename T >
using	IsNotIossEntityBlock

Private Member Functions
int64_t	get_field_internal (const Ioss::Region reg, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::NodeBlock nb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::EdgeBlock eb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::FaceBlock fb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::ElementBlock eb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::StructuredBlock , const Ioss::Field &, void , size_t) const override

int64_t	get_field_internal (const Ioss::Assembly , const Ioss::Field &, void , size_t) const override

int64_t	get_field_internal (const Ioss::Blob , const Ioss::Field &, void , size_t) const override

int64_t	get_field_internal (const Ioss::SideBlock sb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::NodeSet ns, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::EdgeSet es, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::FaceSet fs, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::ElementSet es, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::SideSet ss, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal (const Ioss::CommSet cs, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	get_field_internal_t (const Ioss::GroupingEntity entity, const Ioss::Field &field, void data, size_t data_size) const

template<typename T >
void	get_data (void *data, const std::string &encoded_name, bool use_step_selection=false) const

int64_t	put_field_internal (const Ioss::Region reg, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::NodeBlock nb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::EdgeBlock eb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::FaceBlock fb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::ElementBlock eb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::SideBlock sb, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::NodeSet ns, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::EdgeSet es, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::FaceSet fs, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::ElementSet es, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::SideSet ss, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::CommSet cs, const Ioss::Field &field, void data, size_t data_size) const override

int64_t	put_field_internal (const Ioss::StructuredBlock , const Ioss::Field &, void , size_t) const override

int64_t	put_field_internal (const Ioss::Assembly , const Ioss::Field &, void , size_t) const override

int64_t	put_field_internal (const Ioss::Blob , const Ioss::Field &, void , size_t) const override

template<typename T >
int64_t	put_field_internal_t (T entity, const Ioss::Field &field, void *data, size_t data_size) const

void	define_model (Ioss::Field::RoleType *role=nullptr)

void	define_global_variables ()

template<typename T >
T	get_attribute (const std::string &attribute_name)

template<typename T >
void	put_data (void *data, const std::string &encoded_name) const

template<typename T , typename = typename std::enable_if_t<!std::is_base_of_v<Ioss::EntitySet, T>, T>>
void	put_var_type (const Ioss::Field &field, const std::string &encoded_name, bool transformed_field) const

template<typename T >
void	define_model_internal (const Ioss::Field &field, const std::string &encoded_name, const std::string &entity_type, const std::string &field_name)

template<typename T >
void	define_entity_internal (const T &entity_blocks, Ioss::Field::RoleType *role)

int	get_current_state () const

template<typename T >
BlockInfoType	get_block_infos (const adios2::Variable< T > &var) const

template<typename T >
FieldInfoType	get_variable_infos (const std::string &var_name) const

template<typename T >
std::string	get_property_value (const FieldsMapType &properties_map, const std::string &entity_type, const std::string &entity_name, const std::string &property_name) const

template<typename T >
FieldInfoType	get_expected_variable_infos_from_map (const EntityMapType &fields_map, const std::string &entity_type, const std::string &entity_name, const std::string &var_name) const

FieldInfoType	get_variable_infos_from_map (const EntityMapType &fields_map, const std::string &entity_type, const std::string &entity_name, const std::string &var_name) const

template<typename T , typename = IsIossEntityBlock<T>>
void	define_entity_meta_variables (const std::string &encoded_name)

template<typename T , typename = IsNotIossEntityBlock<T>, typename = void>
void	define_entity_meta_variables (const std::string &encoded_name)

void	define_field_meta_variables (const std::string &)

void	define_coordinate_frames_internal (const Ioss::CoordinateFrameContainer &coordinate_frames)

std::string	encoded_coordinate_frame_name (Ioss::CoordinateFrame coordinate_frame)

void	put_meta_variables (const std::string &encoded_name, const Ioss::Field &field, const std::string &entity_type, const std::string &field_name) const

void	write_meta_data ()

template<typename T >
void	add_entity_property (Ioss::GroupingEntity *ge, const std::string &encoded_name, const std::string &var_name)

void	add_entity_properties (Ioss::GroupingEntity *ge, const FieldsMapType &properties_map, std::string name="")

void	write_properties (const Ioss::GroupingEntity *const entity, const std::string &encoded_name)

template<typename T >
int64_t	write_meta_data_container (const T &entity_blocks)

std::pair< int64_t, int64_t >	write_meta_data_sideblockcontainer (const Ioss::SideBlockContainer &entity_blocks)

template<typename T >
int64_t	get_entities (const FieldsMapType &fields_map, const FieldsMapType &properties_map)

std::string	get_optional_string_variable (const std::string &field_name, const std::string &string_variable) const

void	get_globals (const GlobalMapType &globals_map, const FieldsMapType &properties_map)

void	compute_block_membership_nl (Ioss::SideBlock *efblock, std::vector< std::string > &block_membership) const override

void	define_properties (const Ioss::GroupingEntity *entity_block, const std::string &encoded_entity_name)

void	read_meta_data_nl () override

void	read_communication_metadata ()

void	read_region (const FieldsMapType &fields_map)

void	check_processor_info ()

void	check_model ()

int	RankInit ()

bool	begin_state_nl (int state, double time) override

bool	end_state_nl (int state, double time) override

Private Attributes
unsigned long	rank

AdiosWrapper	adios_wrapper

int	spatialDimension {0}

int64_t	edgeCount {0}

int64_t	faceCount {0}

unsigned long	number_proc

bool	is_streaming

double	previous_time_streaming

Additional Inherited Members
Protected Member Functions inherited from Ioss::DatabaseIO
	DatabaseIO (Region *region, std::string filename, Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props)

void	set_common_side_topology () const

template<typename T >
void	create_groups (const std::string &property_name, EntityType type, const std::string &type_name, const T *set_type)

template<typename T >
void	create_group (EntityType type, const std::string &type_name, const Ioss::NameList &group_spec, const T *set_type)

void	handle_groups ()

void	check_side_topology () const

virtual void	openDatabase_nl () const

virtual void	closeDatabase_nl () const

virtual void	flush_database_nl () const

virtual void	release_memory_nl ()

virtual void	reset_database_nl ()

Protected Attributes inherited from Ioss::DatabaseIO
Ioss::PropertyManager	properties

ElementTopology *	commonSideTopology {nullptr}

std::string	originalDBFilename {}

std::string	DBFilename {}

std::string	decodedFilename {}

std::string	bbName {}

std::string	pfsName {}

std::string	dwPath {}

Ioss::State	dbState {STATE_INVALID}

int	myProcessor {0}
	number of processor this database is for

int64_t	nodeCount {0}

int64_t	elementCount {0}

TopoContainer	sideTopology {}
	Used to speed up faceblock/edgeblock calculations.

int	cycleCount {0}

int	overlayCount {0}

double	timeScaleFactor {1.0}

Ioss::SurfaceSplitType	splitType {SPLIT_BY_TOPOLOGIES}

Ioss::DatabaseUsage	dbUsage {}

Ioss::DataSize	dbIntSizeAPI {USE_INT32_API}

bool	filePerState {false}

bool	usingDataWarp {false}

bool	isParallel {false}
	true if running in parallel

bool	lowerCaseVariableNames {true}

bool	usingParallelIO {false}

Ioss::NameList	blockOmissions {}

Ioss::NameList	blockInclusions {}

Ioss::NameList	assemblyOmissions {}

Ioss::NameList	assemblyInclusions {}

Ioss::NameList	informationRecords {}

Ioss::NameList	qaRecords {}

Ioss::Map	nodeMap {"node", DBFilename, myProcessor}

Ioss::Map	edgeMap {"edge", DBFilename, myProcessor}

Ioss::Map	faceMap {"face", DBFilename, myProcessor}

Ioss::Map	elemMap {"element", DBFilename, myProcessor}

std::vector< std::vector< bool > >	blockAdjacency

Member Typedef Documentation

◆ EntityMapType

using Ioad::DatabaseIO::EntityMapType = std::map<std::string, GlobalMapType>

private

◆ FieldsMapType

using Ioad::DatabaseIO::FieldsMapType = std::map<std::string, EntityMapType>

private

◆ GlobalMapType

using Ioad::DatabaseIO::GlobalMapType = std::map<std::string, std::pair<std::string, std::string>>

private

◆ IsIossEntityBlock

template<typename T >

using Ioad::DatabaseIO::IsIossEntityBlock = typename std::enable_if_t<std::is_base_of_v<Ioss::EntityBlock, T>>

private

◆ IsNotIossEntityBlock

template<typename T >

using Ioad::DatabaseIO::IsNotIossEntityBlock

private

Initial value:

typename std::enable_if_t<!std::is_base_of_v<Ioss::EntityBlock, T>>

Constructor & Destructor Documentation

◆ DatabaseIO()

Ioad::DatabaseIO::DatabaseIO	(	Ioss::Region *	region,
		const std::string &	filename,
		Ioss::DatabaseUsage	db_usage,
		Ioss_MPI_Comm	communicator,
		const Ioss::PropertyManager &	props )

Member Function Documentation

◆ add_entity_properties()

void Ioad::DatabaseIO::add_entity_properties	(	Ioss::GroupingEntity *	ge,
		const FieldsMapType &	properties_map,
		std::string	name = "" )

private

◆ add_entity_property()

template<typename T >

void Ioad::DatabaseIO::add_entity_property	(	Ioss::GroupingEntity *	ge,
		const std::string &	encoded_name,
		const std::string &	var_name )

private

◆ begin_nl()

bool Ioad::DatabaseIO::begin_nl ( Ioss::State state )

overridevirtual

Implements Ioss::DatabaseIO.

◆ begin_state_nl()

bool Ioad::DatabaseIO::begin_state_nl	(	int	state,
		double	time )

overrideprivatevirtual

Reimplemented from Ioss::DatabaseIO.

◆ check_model()

void Ioad::DatabaseIO::check_model ( )

private

◆ check_processor_info()

void Ioad::DatabaseIO::check_processor_info ( )

private

◆ compute_block_membership_nl()

void Ioad::DatabaseIO::compute_block_membership_nl	(	Ioss::SideBlock *	efblock,
		std::vector< std::string > &	block_membership ) const

overrideprivate

◆ define_coordinate_frames_internal()

void Ioad::DatabaseIO::define_coordinate_frames_internal ( const Ioss::CoordinateFrameContainer & coordinate_frames )

private

◆ define_entity_internal()

template<typename T >

void Ioad::DatabaseIO::define_entity_internal	(	const T &	entity_blocks,
		Ioss::Field::RoleType *	role )

private

◆ define_entity_meta_variables() [1/2]

template<typename T , typename >

void Ioad::DatabaseIO::define_entity_meta_variables ( const std::string & encoded_name )

private

◆ define_entity_meta_variables() [2/2]

template<typename T , typename , typename >

void Ioad::DatabaseIO::define_entity_meta_variables ( const std::string & encoded_name )

private

◆ define_field_meta_variables()

void Ioad::DatabaseIO::define_field_meta_variables ( const std::string & encoded_name )

private

◆ define_global_variables()

void Ioad::DatabaseIO::define_global_variables ( )

private

◆ define_model()

void Ioad::DatabaseIO::define_model ( Ioss::Field::RoleType * role = nullptr )

private

◆ define_model_internal()

template<typename T >

void Ioad::DatabaseIO::define_model_internal	(	const Ioss::Field &	field,
		const std::string &	encoded_name,
		const std::string &	entity_type,
		const std::string &	field_name )

private

◆ define_properties()

void Ioad::DatabaseIO::define_properties	(	const Ioss::GroupingEntity *	entity_block,
		const std::string &	encoded_entity_name )

private

◆ encoded_coordinate_frame_name()

std::string Ioad::DatabaseIO::encoded_coordinate_frame_name ( Ioss::CoordinateFrame coordinate_frame )

private

◆ end_nl()

bool Ioad::DatabaseIO::end_nl ( Ioss::State state )

overridevirtual

Implements Ioss::DatabaseIO.

◆ end_state_nl()

bool Ioad::DatabaseIO::end_state_nl	(	int	state,
		double	time )

overrideprivatevirtual

Reimplemented from Ioss::DatabaseIO.

◆ entity_field_support()

unsigned Ioad::DatabaseIO::entity_field_support ( ) const

overridevirtual

Implements Ioss::DatabaseIO.

◆ get_attribute()

template<typename T >

T Ioad::DatabaseIO::get_attribute ( const std::string & attribute_name )

private

◆ get_block_infos()

template<typename T >

DatabaseIO::BlockInfoType Ioad::DatabaseIO::get_block_infos ( const adios2::Variable< T > & var ) const

private

◆ get_current_state()

int Ioad::DatabaseIO::get_current_state ( ) const

private

◆ get_data()

template<typename T >

void Ioad::DatabaseIO::get_data	(	void *	data,
		const std::string &	encoded_name,
		bool	use_step_selection = false ) const

private

◆ get_entities()

template<typename T >

int64_t Ioad::DatabaseIO::get_entities	(	const FieldsMapType &	fields_map,
		const FieldsMapType &	properties_map )

private

◆ get_expected_variable_infos_from_map()

template<typename T >

DatabaseIO::FieldInfoType Ioad::DatabaseIO::get_expected_variable_infos_from_map	(	const EntityMapType &	fields_map,
		const std::string &	entity_type,
		const std::string &	entity_name,
		const std::string &	var_name ) const

private

◆ get_field_internal() [1/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::Assembly *	,
		const Ioss::Field &	,
		void *	,
		size_t	) const

inlineoverrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [2/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::Blob *	,
		const Ioss::Field &	,
		void *	,
		size_t	) const

inlineoverrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [3/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::CommSet *	cs,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [4/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::EdgeBlock *	eb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [5/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::EdgeSet *	es,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [6/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::ElementBlock *	eb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [7/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::ElementSet *	es,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [8/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::FaceBlock *	fb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [9/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::FaceSet *	fs,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [10/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::NodeBlock *	nb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [11/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::NodeSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [12/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::Region *	reg,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [13/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::SideBlock *	sb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [14/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::SideSet *	ss,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal() [15/15]

int64_t Ioad::DatabaseIO::get_field_internal	(	const Ioss::StructuredBlock *	,
		const Ioss::Field &	,
		void *	,
		size_t	) const

inlineoverrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ get_field_internal_t()

int64_t Ioad::DatabaseIO::get_field_internal_t	(	const Ioss::GroupingEntity *	entity,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

private

◆ get_format()

std::string Ioad::DatabaseIO::get_format ( ) const

inlineoverridevirtual

Return a string specifying underlying format of database (exodus, cgns, ...)

Implements Ioss::DatabaseIO.

◆ get_globals()

void Ioad::DatabaseIO::get_globals	(	const GlobalMapType &	globals_map,
		const FieldsMapType &	properties_map )

private

◆ get_optional_string_variable()

std::string Ioad::DatabaseIO::get_optional_string_variable	(	const std::string &	field_name,
		const std::string &	string_variable ) const

private

◆ get_property_value()

template<typename T >

std::string Ioad::DatabaseIO::get_property_value	(	const FieldsMapType &	properties_map,
		const std::string &	entity_type,
		const std::string &	entity_name,
		const std::string &	property_name ) const

private

◆ get_variable_infos()

template<typename T >

DatabaseIO::FieldInfoType Ioad::DatabaseIO::get_variable_infos ( const std::string & var_name ) const

private

◆ get_variable_infos_from_map()

DatabaseIO::FieldInfoType Ioad::DatabaseIO::get_variable_infos_from_map	(	const EntityMapType &	fields_map,
		const std::string &	entity_type,
		const std::string &	entity_name,
		const std::string &	var_name ) const

private

◆ int_byte_size_db()

int Ioad::DatabaseIO::int_byte_size_db ( ) const

overridevirtual

Implements Ioss::DatabaseIO.

◆ put_data()

template<typename T >

void Ioad::DatabaseIO::put_data	(	void *	data,
		const std::string &	encoded_name ) const

private

◆ put_field_internal() [1/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::Assembly *	,
		const Ioss::Field &	,
		void *	,
		size_t	) const

inlineoverrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [2/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::Blob *	,
		const Ioss::Field &	,
		void *	,
		size_t	) const

inlineoverrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [3/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::CommSet *	cs,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [4/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::EdgeBlock *	eb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [5/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::EdgeSet *	es,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [6/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::ElementBlock *	eb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [7/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::ElementSet *	es,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [8/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::FaceBlock *	fb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [9/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::FaceSet *	fs,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [10/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::NodeBlock *	nb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [11/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::NodeSet *	ns,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [12/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::Region *	reg,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [13/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::SideBlock *	sb,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [14/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::SideSet *	ss,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal() [15/15]

int64_t Ioad::DatabaseIO::put_field_internal	(	const Ioss::StructuredBlock *	,
		const Ioss::Field &	,
		void *	,
		size_t	) const

inlineoverrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ put_field_internal_t()

template<typename T >

int64_t Ioad::DatabaseIO::put_field_internal_t	(	T	entity,
		const Ioss::Field &	field,
		void *	data,
		size_t	data_size ) const

private

◆ put_meta_variables()

void Ioad::DatabaseIO::put_meta_variables	(	const std::string &	encoded_name,
		const Ioss::Field &	field,
		const std::string &	entity_type,
		const std::string &	field_name ) const

private

◆ put_var_type()

template<typename T , typename = typename std::enable_if_t<!std::is_base_of_v<Ioss::EntitySet, T>, T>>

void Ioad::DatabaseIO::put_var_type	(	const Ioss::Field &	field,
		const std::string &	encoded_name,
		bool	transformed_field ) const

private

◆ RankInit()

int Ioad::DatabaseIO::RankInit ( )

private

◆ read_communication_metadata()

void Ioad::DatabaseIO::read_communication_metadata ( )

private

◆ read_meta_data_nl()

void Ioad::DatabaseIO::read_meta_data_nl ( )

overrideprivatevirtual

Implements Ioss::DatabaseIO.

◆ read_region()

void Ioad::DatabaseIO::read_region ( const FieldsMapType & fields_map )

private

◆ write_meta_data()

void Ioad::DatabaseIO::write_meta_data ( )

private

◆ write_meta_data_container()

template<typename T >

int64_t Ioad::DatabaseIO::write_meta_data_container ( const T & entity_blocks )

private

◆ write_meta_data_sideblockcontainer()

std::pair< int64_t, int64_t > Ioad::DatabaseIO::write_meta_data_sideblockcontainer ( const Ioss::SideBlockContainer & entity_blocks )

private

◆ write_properties()

void Ioad::DatabaseIO::write_properties	(	const Ioss::GroupingEntity *const	entity,
		const std::string &	encoded_name )

private

Member Data Documentation

◆ adios_wrapper

AdiosWrapper Ioad::DatabaseIO::adios_wrapper

mutableprivate

◆ edgeCount

int64_t Ioad::DatabaseIO::edgeCount {0}

private

◆ faceCount

int64_t Ioad::DatabaseIO::faceCount {0}

private

◆ is_streaming

bool Ioad::DatabaseIO::is_streaming

private

◆ number_proc

unsigned long Ioad::DatabaseIO::number_proc

private

◆ previous_time_streaming

double Ioad::DatabaseIO::previous_time_streaming

private

◆ rank

unsigned long Ioad::DatabaseIO::rank

private

◆ spatialDimension

int Ioad::DatabaseIO::spatialDimension {0}

private

The documentation for this class was generated from the following files:

src/adios/Ioad_DatabaseIO.h
src/adios/Ioad_DatabaseIO.C

Classes

Public Member Functions

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ EntityMapType

◆ FieldsMapType

◆ GlobalMapType

◆ IsIossEntityBlock

◆ IsNotIossEntityBlock

Constructor & Destructor Documentation

◆ DatabaseIO()

Member Function Documentation

◆ add_entity_properties()

◆ add_entity_property()

◆ begin_nl()

◆ begin_state_nl()

◆ check_model()

◆ check_processor_info()

◆ compute_block_membership_nl()

◆ define_coordinate_frames_internal()

◆ define_entity_internal()

◆ define_entity_meta_variables() [1/2]

◆ define_entity_meta_variables() [2/2]

◆ define_field_meta_variables()

◆ define_global_variables()

◆ define_model()

◆ define_model_internal()

◆ define_properties()

◆ encoded_coordinate_frame_name()

◆ end_nl()

◆ end_state_nl()

◆ entity_field_support()

◆ get_attribute()

◆ get_block_infos()

◆ get_current_state()

◆ get_data()

◆ get_entities()

◆ get_expected_variable_infos_from_map()

◆ get_field_internal() [1/15]

◆ get_field_internal() [2/15]

◆ get_field_internal() [3/15]

◆ get_field_internal() [4/15]

◆ get_field_internal() [5/15]

◆ get_field_internal() [6/15]

◆ get_field_internal() [7/15]

◆ get_field_internal() [8/15]

◆ get_field_internal() [9/15]

◆ get_field_internal() [10/15]

◆ get_field_internal() [11/15]

◆ get_field_internal() [12/15]

◆ get_field_internal() [13/15]

◆ get_field_internal() [14/15]

◆ get_field_internal() [15/15]

◆ get_field_internal_t()

◆ get_format()

◆ get_globals()

◆ get_optional_string_variable()

◆ get_property_value()

◆ get_variable_infos()

◆ get_variable_infos_from_map()

◆ int_byte_size_db()

◆ put_data()

◆ put_field_internal() [1/15]

◆ put_field_internal() [2/15]

◆ put_field_internal() [3/15]

◆ put_field_internal() [4/15]

◆ put_field_internal() [5/15]

◆ put_field_internal() [6/15]

◆ put_field_internal() [7/15]

◆ put_field_internal() [8/15]

◆ put_field_internal() [9/15]

◆ put_field_internal() [10/15]

◆ put_field_internal() [11/15]

◆ put_field_internal() [12/15]

◆ put_field_internal() [13/15]

◆ put_field_internal() [14/15]

◆ put_field_internal() [15/15]