#include <AlbPUMI_FMDBDiscretization.hpp>

Inheritance diagram for AlbPUMI::FMDBDiscretization< Output >:

Collaboration diagram for AlbPUMI::FMDBDiscretization< Output >:

Public Member Functions
	FMDBDiscretization (Teuchos::RCP< AlbPUMI::FMDBMeshStruct > fmdbMeshStruct, const Teuchos::RCP< const Epetra_Comm > &comm, const Teuchos::RCP< Piro::MLRigidBodyModes > &rigidBodyModes=Teuchos::null)
	Constructor.
	~FMDBDiscretization ()
	Destructor.
Teuchos::RCP< const Epetra_Map >	getMap () const
	Get DOF map.
Teuchos::RCP< const Epetra_Map >	getOverlapMap () const
	Get overlapped DOF map.
Teuchos::RCP< const Epetra_CrsGraph >	getJacobianGraph () const
	Get Jacobian graph.
Teuchos::RCP< const Epetra_CrsGraph >	getOverlapJacobianGraph () const
	Get overlap Jacobian graph.
Teuchos::RCP< const Epetra_Map >	getNodeMap () const
	Get Node map.
Teuchos::RCP< const Epetra_Map >	getOverlapNodeMap () const
	Get Overlap Node map.
void	setupMLCoords ()
	Process coords for ML.
const Albany::NodeSetList &	getNodeSets () const
	Get Node set lists (typedef in Albany_AbstractDiscretization.hpp).
const Albany::NodeSetCoordList &	getNodeSetCoords () const
const Albany::SideSetList &	getSideSets (const int workset) const
	Get Side set lists (typedef in Albany_AbstractDiscretization.hpp).
Albany::WsLIDList &	getElemGIDws ()
	Get connectivity map from elementGID to workset.
const Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP < Teuchos::ArrayRCP< int > > > >::type &	getWsElNodeEqID () const
	Get map from (Ws, El, Local Node) -> NodeLID.
const Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< int > > >::type &	getWsElNodeID () const
Teuchos::ArrayRCP< double > &	getCoordinates () const
	Retrieve coodinate vector (num_used_nodes * 3).
const Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double * > > >::type &	getCoords () const
const Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double > > >::type &	getSurfaceHeight () const
const Albany::WorksetArray < Teuchos::ArrayRCP< double > >::type &	getTemperature () const
const Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double > > >::type &	getBasalFriction () const
const Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double > > >::type &	getThickness () const
const Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double * > > >::type &	getSurfaceVelocity () const
const Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double * > > >::type &	getVelocityRMS () const
const Albany::WorksetArray < Teuchos::ArrayRCP< double > >::type &	getFlowFactor () const
void	printCoords () const
	Print coords for debugging.
void	debugMeshWriteNative (const Epetra_Vector &sol, const char *filename)
void	debugMeshWrite (const Epetra_Vector &sol, const char *filename)
int	getNumDim () const
	Get number of spatial dimensions.
virtual Teuchos::RCP< const Epetra_Comm >	getComm () const
int	getNumEq () const
	Get number of total DOFs per node.
Albany::StateArrays &	getStateArrays ()
const Albany::WorksetArray < std::string >::type &	getWsEBNames () const
	Retrieve Vector (length num worksets) of element block names.
const Albany::WorksetArray < int >::type &	getWsPhysIndex () const
	Retrieve Vector (length num worksets) of physics set index.
void	writeSolution (const Epetra_Vector &soln, const double time, const bool overlapped=false)
	Write the solution to the output file.
Teuchos::RCP< Epetra_Vector >	getSolutionField () const
	Get solution vector from mesh database.
void	setResidualField (const Epetra_Vector &residual)
	Set the residual field for output.
Teuchos::RCP < AlbPUMI::FMDBMeshStruct >	getFMDBMeshStruct ()
Teuchos::RCP < Albany::AbstractMeshStruct >	getMeshStruct () const
bool	hasRestartSolution () const
	Flag if solution has a restart values -- used in Init Cond.
double	restartDataTime () const
	If restarting, convenience function to return restart data time.
virtual bool	supportsMOR () const
	FMDB does not support MOR.
void	updateMesh ()
void	getOwned_xyz (double x, double y, double z, double rbm, int &nNodes, int numPDEs, int numScalar, int nullSpaceDim)
	Accessor function to get coordinates for ML. Memory controlled here.
void	transformMesh ()
int	getDOF (const int inode, const int eq) const
int	getOwnedDOF (const int inode, const int eq) const
int	getOverlapDOF (const int inode, const int eq) const
int	getGlobalDOF (const int inode, const int eq) const
void	setField (const char *name, const Epetra_Vector &data, bool overlapped, int offset=0)
void	setSplitFields (std::vector< std::string > names, std::vector< int > indices, const Epetra_Vector &data, bool overlapped)
void	getField (const char *name, Epetra_Vector &data, bool overlapped, int offset=0) const
void	getSplitFields (std::vector< std::string > names, std::vector< int > indices, Epetra_Vector &data, bool overlapped) const
void	reNameExodusOutput (const std::string &str)
Protected Attributes
Output	meshOutput
	Output object.
Teuchos::RCP< const Epetra_Comm >	comm
	Stk Mesh Objects.
Teuchos::RCP< Epetra_Map >	node_map
	Node map.
Teuchos::RCP< Epetra_Map >	map
	Unknown Map.
Teuchos::RCP< Epetra_Map >	overlap_map
	Overlapped unknown map, and node map.
Teuchos::RCP< Epetra_Map >	overlap_node_map
Teuchos::RCP< Epetra_CrsGraph >	graph
	Jacobian matrix graph.
Teuchos::RCP< Epetra_CrsGraph >	overlap_graph
	Overlapped Jacobian matrix graph.
const unsigned int	neq
	Number of equations (and unknowns) per node.
Albany::NodeSetList	nodeSets
	node sets stored as std::map(string ID, int vector of GIDs)
Albany::NodeSetCoordList	nodeSetCoords
std::vector< Albany::SideSetList >	sideSets
	side sets stored as std::map(string ID, SideArray classes) per workset (std::vector across worksets)
Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP < Teuchos::ArrayRCP< int > > > >::type	wsElNodeEqID
	Connectivity array [workset, element, local-node, Eq] => LID.
Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< int > > >::type	wsElNodeID
Teuchos::ArrayRCP< double >	coordinates
Albany::WorksetArray < std::string >::type	wsEBNames
Albany::WorksetArray< int >::type	wsPhysIndex
Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double * > > >::type	coords
Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double > > >::type	sHeight
Albany::WorksetArray < Teuchos::ArrayRCP< double > >::type	temperature
Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double > > >::type	basalFriction
Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double > > >::type	thickness
Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double * > > >::type	surfaceVelocity
Albany::WorksetArray < Teuchos::ArrayRCP < Teuchos::ArrayRCP< double * > > >::type	velocityRMS
Albany::WorksetArray < Teuchos::ArrayRCP< double > >::type	flowFactor
Albany::WsLIDList	elemGIDws
	Connectivity map from elementGID to workset and LID in workset.
Albany::StateArrays	stateArrays
apf::DynamicArray< apf::Node >	nodes
	list of all overlap nodes, saved for setting solution
int	numOwnedNodes
	Number of elements on this processor.
int	numOverlapNodes
int	numGlobalNodes
double *	xx
double *	yy
double *	zz
double *	rr
bool	allocated_xyz
Teuchos::RCP < AlbPUMI::FMDBMeshStruct >	fmdbMeshStruct
bool	interleavedOrdering
std::vector< std::vector < apf::MeshEntity * > >	buckets
std::map< std::string, std::vector< double > >	nodeset_node_coords
Teuchos::RCP < Piro::MLRigidBodyModes >	rigidBodyModes
int	outputInterval
Private Types
enum	TRANSFORMTYPE { NONE, ISMIP_HOM_TEST_A }
Private Member Functions
	FMDBDiscretization (const FMDBDiscretization &)
	Private to prohibit copying.
FMDBDiscretization &	operator= (const FMDBDiscretization &)
	Private to prohibit copying.
void	setSolutionField (const Epetra_Vector &soln)
int	nonzeroesPerRow (const int neq) const
double	monotonicTimeLabel (const double time)
void	computeOwnedNodesAndUnknowns ()
	Process FMDB mesh for Owned nodal quantitites.
void	computeOverlapNodesAndUnknowns ()
	Process FMDB mesh for Overlap nodal quantitites.
void	computeGraphs ()
	Process FMDB mesh for CRS Graphs.
void	computeWorksetInfo ()
	Process FMDB mesh for Workset/Bucket Info.
void	computeNodeSets ()
	Process FMDB mesh for NodeSets.
void	computeSideSets ()
	Process FMDB mesh for SideSets.
void	copyQPScalarToAPF (unsigned nqp, QPData< double, 2 > &state, apf::Field *f)
	Transfer QPData to APF.
void	copyQPVectorToAPF (unsigned nqp, QPData< double, 3 > &state, apf::Field *f)
void	copyQPTensorToAPF (unsigned nqp, QPData< double, 4 > &state, apf::Field *f)
void	copyQPStatesToAPF ()
void	removeQPStatesFromAPF ()
Private Attributes
std::vector< std::string >	solNames
std::vector< std::string >	resNames
std::vector< int >	solIndex
Teuchos::RCP < Teuchos::FancyOStream >	out
	Call stk_io for creating exodus output file.
double	previous_time_label
TRANSFORMTYPE	transform_type

Detailed Description

template<class Output>
class AlbPUMI::FMDBDiscretization< Output >

Definition at line 30 of file AlbPUMI_FMDBDiscretization.hpp.

Member Enumeration Documentation

template<class Output >

enum AlbPUMI::FMDBDiscretization::TRANSFORMTYPE [private]

Enumerator:

NONE
ISMIP_HOM_TEST_A

Definition at line 231 of file AlbPUMI_FMDBDiscretization.hpp.

Constructor & Destructor Documentation

template<class Output >

AlbPUMI::FMDBDiscretization< Output >::FMDBDiscretization	(	Teuchos::RCP< AlbPUMI::FMDBMeshStruct >	fmdbMeshStruct,
		const Teuchos::RCP< const Epetra_Comm > &	comm,
		const Teuchos::RCP< Piro::MLRigidBodyModes > &	rigidBodyModes = `Teuchos::null`
	)

Constructor.

Definition at line 26 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

AlbPUMI::FMDBDiscretization< Output >::~FMDBDiscretization ( )

Destructor.

Definition at line 60 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

AlbPUMI::FMDBDiscretization< Output >::FMDBDiscretization ( const FMDBDiscretization< Output > & ) [private]

Private to prohibit copying.

Member Function Documentation

template<class Output >

Teuchos::RCP< const Epetra_Map > AlbPUMI::FMDBDiscretization< Output >::getMap ( ) const [virtual]

Get DOF map.

Implements Albany::AbstractDiscretization.

Definition at line 66 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

Teuchos::RCP< const Epetra_Map > AlbPUMI::FMDBDiscretization< Output >::getOverlapMap ( ) const [virtual]

Get overlapped DOF map.

Implements Albany::AbstractDiscretization.

Definition at line 73 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

Teuchos::RCP< const Epetra_CrsGraph > AlbPUMI::FMDBDiscretization< Output >::getJacobianGraph ( ) const [virtual]

Get Jacobian graph.

Implements Albany::AbstractDiscretization.

Definition at line 80 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

Teuchos::RCP< const Epetra_CrsGraph > AlbPUMI::FMDBDiscretization< Output >::getOverlapJacobianGraph ( ) const [virtual]

Get overlap Jacobian graph.

Implements Albany::AbstractDiscretization.

Definition at line 87 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

Teuchos::RCP< const Epetra_Map > AlbPUMI::FMDBDiscretization< Output >::getNodeMap ( ) const [virtual]

Get Node map.

Implements Albany::AbstractDiscretization.

Definition at line 94 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

Teuchos::RCP< const Epetra_Map > AlbPUMI::FMDBDiscretization< Output >::getOverlapNodeMap ( ) const

Get Overlap Node map.

Definition at line 101 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::setupMLCoords ( )

Process coords for ML.

Definition at line 217 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::NodeSetList& AlbPUMI::FMDBDiscretization< Output >::getNodeSets ( ) const [inline, virtual]

Get Node set lists (typedef in Albany_AbstractDiscretization.hpp).

Implements Albany::AbstractDiscretization.

Definition at line 65 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

const Albany::NodeSetCoordList& AlbPUMI::FMDBDiscretization< Output >::getNodeSetCoords ( ) const [inline, virtual]

Implements Albany::AbstractDiscretization.

Definition at line 66 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

const Albany::SideSetList& AlbPUMI::FMDBDiscretization< Output >::getSideSets ( const int workset ) const [inline, virtual]

Get Side set lists (typedef in Albany_AbstractDiscretization.hpp).

Implements Albany::AbstractDiscretization.

Definition at line 69 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Albany::WsLIDList& AlbPUMI::FMDBDiscretization< Output >::getElemGIDws ( ) [inline, virtual]

Get connectivity map from elementGID to workset.

Implements Albany::AbstractDiscretization.

Definition at line 72 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< Teuchos::ArrayRCP< Teuchos::ArrayRCP< int > > > >::type & AlbPUMI::FMDBDiscretization< Output >::getWsElNodeEqID ( ) const [virtual]

Get map from (Ws, El, Local Node) -> NodeLID.

Implements Albany::AbstractDiscretization.

Definition at line 108 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< Teuchos::ArrayRCP< int > > >::type & AlbPUMI::FMDBDiscretization< Output >::getWsElNodeID ( ) const [virtual]

Implements Albany::AbstractDiscretization.

Definition at line 115 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

Teuchos::ArrayRCP< double > & AlbPUMI::FMDBDiscretization< Output >::getCoordinates ( ) const [virtual]

Retrieve coodinate vector (num_used_nodes * 3).

Implements Albany::AbstractDiscretization.

Definition at line 148 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< Teuchos::ArrayRCP< double * > > >::type & AlbPUMI::FMDBDiscretization< Output >::getCoords ( ) const [virtual]

Implements Albany::AbstractDiscretization.

Definition at line 122 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< Teuchos::ArrayRCP< double > > >::type & AlbPUMI::FMDBDiscretization< Output >::getSurfaceHeight ( ) const [virtual]

Implements Albany::AbstractDiscretization.

Definition at line 160 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< double > >::type & AlbPUMI::FMDBDiscretization< Output >::getTemperature ( ) const [virtual]

Implements Albany::AbstractDiscretization.

Definition at line 167 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< Teuchos::ArrayRCP< double > > >::type & AlbPUMI::FMDBDiscretization< Output >::getBasalFriction ( ) const [virtual]

Implements Albany::AbstractDiscretization.

Definition at line 174 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< Teuchos::ArrayRCP< double > > >::type & AlbPUMI::FMDBDiscretization< Output >::getThickness ( ) const [virtual]

Implements Albany::AbstractDiscretization.

Definition at line 181 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< Teuchos::ArrayRCP< double * > > >::type & AlbPUMI::FMDBDiscretization< Output >::getSurfaceVelocity ( ) const [virtual]

Implements Albany::AbstractDiscretization.

Definition at line 195 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< Teuchos::ArrayRCP< double * > > >::type & AlbPUMI::FMDBDiscretization< Output >::getVelocityRMS ( ) const [virtual]

Implements Albany::AbstractDiscretization.

Definition at line 202 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< Teuchos::ArrayRCP< double > >::type & AlbPUMI::FMDBDiscretization< Output >::getFlowFactor ( ) const [virtual]

Implements Albany::AbstractDiscretization.

Definition at line 188 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::printCoords ( ) const [virtual]

Print coords for debugging.

Implements Albany::AbstractDiscretization.

Definition at line 129 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::debugMeshWriteNative	(	const Epetra_Vector &	sol,
		const char *	filename
	)			`[virtual]`

Implements AlbPUMI::AbstractPUMIDiscretization.

Definition at line 416 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::debugMeshWrite	(	const Epetra_Vector &	sol,
		const char *	filename
	)			`[virtual]`

Implements AlbPUMI::AbstractPUMIDiscretization.

Definition at line 430 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

int AlbPUMI::FMDBDiscretization< Output >::getNumDim ( ) const [inline, virtual]

Get number of spatial dimensions.

Implements Albany::AbstractDiscretization.

Definition at line 99 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

virtual Teuchos::RCP<const Epetra_Comm> AlbPUMI::FMDBDiscretization< Output >::getComm ( ) const [inline, virtual]

Implements AlbPUMI::AbstractPUMIDiscretization.

Definition at line 101 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

int AlbPUMI::FMDBDiscretization< Output >::getNumEq ( ) const [inline, virtual]

Get number of total DOFs per node.

Implements Albany::AbstractDiscretization.

Definition at line 104 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Albany::StateArrays& AlbPUMI::FMDBDiscretization< Output >::getStateArrays ( ) [inline, virtual]

Implements Albany::AbstractDiscretization.

Definition at line 106 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

const Albany::WorksetArray< std::string >::type & AlbPUMI::FMDBDiscretization< Output >::getWsEBNames ( ) const [virtual]

Retrieve Vector (length num worksets) of element block names.

Implements Albany::AbstractDiscretization.

Definition at line 275 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

const Albany::WorksetArray< int >::type & AlbPUMI::FMDBDiscretization< Output >::getWsPhysIndex ( ) const [virtual]

Retrieve Vector (length num worksets) of physics set index.

Implements Albany::AbstractDiscretization.

Definition at line 282 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::writeSolution	(	const Epetra_Vector &	solution,
		const double	time,
		const bool	overlapped = `false`
	)			`[virtual]`

Write the solution to the output file.

Implements Albany::AbstractDiscretization.

Definition at line 380 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

Teuchos::RCP< Epetra_Vector > AlbPUMI::FMDBDiscretization< Output >::getSolutionField ( ) const [virtual]

Get solution vector from mesh database.

Implements Albany::AbstractDiscretization.

Definition at line 493 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::setResidualField ( const Epetra_Vector & residual ) [virtual]

Set the residual field for output.

Implements Albany::AbstractDiscretization.

Definition at line 481 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

Teuchos::RCP<AlbPUMI::FMDBMeshStruct> AlbPUMI::FMDBDiscretization< Output >::getFMDBMeshStruct ( ) [inline, virtual]

Implements AlbPUMI::AbstractPUMIDiscretization.

Definition at line 120 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::RCP<Albany::AbstractMeshStruct> AlbPUMI::FMDBDiscretization< Output >::getMeshStruct ( ) const [inline, virtual]

Implements Albany::AbstractDiscretization.

Definition at line 121 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

bool AlbPUMI::FMDBDiscretization< Output >::hasRestartSolution ( ) const [inline, virtual]

Flag if solution has a restart values -- used in Init Cond.

Implements Albany::AbstractDiscretization.

Definition at line 124 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

double AlbPUMI::FMDBDiscretization< Output >::restartDataTime ( ) const [inline, virtual]

If restarting, convenience function to return restart data time.

Implements Albany::AbstractDiscretization.

Definition at line 127 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

virtual bool AlbPUMI::FMDBDiscretization< Output >::supportsMOR ( ) const [inline, virtual]

FMDB does not support MOR.

Implements Albany::AbstractDiscretization.

Definition at line 130 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::updateMesh ( ) [virtual]

Implements AlbPUMI::AbstractPUMIDiscretization.

Definition at line 1144 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::getOwned_xyz	(	double **	x,
		double **	y,
		double **	z,
		double **	rbm,
		int &	nNodes,
		int	numPDEs,
		int	numScalar,
		int	nullSpaceDim
	)

Accessor function to get coordinates for ML. Memory controlled here.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::transformMesh ( ) [inline]

Definition at line 141 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

int AlbPUMI::FMDBDiscretization< Output >::getDOF	(	const int	inode,
		const int	eq
	)			const `[inline]`

Definition at line 143 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

int AlbPUMI::FMDBDiscretization< Output >::getOwnedDOF	(	const int	inode,
		const int	eq
	)			const `[inline]`

Definition at line 149 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

int AlbPUMI::FMDBDiscretization< Output >::getOverlapDOF	(	const int	inode,
		const int	eq
	)			const `[inline]`

Definition at line 154 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

int AlbPUMI::FMDBDiscretization< Output >::getGlobalDOF	(	const int	inode,
		const int	eq
	)			const `[inline]`

Definition at line 159 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::setField	(	const char *	name,
		const Epetra_Vector &	data,
		bool	overlapped,
		int	offset = `0`
	)

Definition at line 288 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::setSplitFields	(	std::vector< std::string >	names,
		std::vector< int >	indices,
		const Epetra_Vector &	data,
		bool	overlapped
	)

Definition at line 317 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::getField	(	const char *	name,
		Epetra_Vector &	data,
		bool	overlapped,
		int	offset = `0`
	)			const

Definition at line 333 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::getSplitFields	(	std::vector< std::string >	names,
		std::vector< int >	indices,
		Epetra_Vector &	data,
		bool	overlapped
	)			const

Definition at line 362 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::reNameExodusOutput ( const std::string & str ) [inline, virtual]

Implements AlbPUMI::AbstractPUMIDiscretization.

Definition at line 183 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

FMDBDiscretization& AlbPUMI::FMDBDiscretization< Output >::operator= ( const FMDBDiscretization< Output > & ) [private]

Private to prohibit copying.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::setSolutionField ( const Epetra_Vector & soln ) [private, virtual]

Reimplemented from Albany::AbstractDiscretization.

Definition at line 512 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

int AlbPUMI::FMDBDiscretization< Output >::nonzeroesPerRow ( const int neq ) const [private]

Definition at line 524 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

double AlbPUMI::FMDBDiscretization< Output >::monotonicTimeLabel ( const double time ) [private]

Definition at line 454 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::computeOwnedNodesAndUnknowns ( ) [private]

Process FMDB mesh for Owned nodal quantitites.

Definition at line 544 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::computeOverlapNodesAndUnknowns ( ) [private]

Process FMDB mesh for Overlap nodal quantitites.

Definition at line 572 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::computeGraphs ( ) [private]

Process FMDB mesh for CRS Graphs.

Definition at line 599 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::computeWorksetInfo ( ) [private]

Process FMDB mesh for Workset/Bucket Info.

Definition at line 654 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::computeNodeSets ( ) [private]

Process FMDB mesh for NodeSets.

Definition at line 1095 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::computeSideSets ( ) [private]

Process FMDB mesh for SideSets.

Definition at line 1010 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::copyQPScalarToAPF	(	unsigned	nqp,
		QPData< double, 2 > &	state,
		apf::Field *	f
	)			`[private]`

Transfer QPData to APF.

Definition at line 912 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::copyQPVectorToAPF	(	unsigned	nqp,
		QPData< double, 3 > &	state,
		apf::Field *	f
	)			`[private]`

Definition at line 927 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::copyQPTensorToAPF	(	unsigned	nqp,
		QPData< double, 4 > &	state,
		apf::Field *	f
	)			`[private]`

Definition at line 947 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::copyQPStatesToAPF ( ) [private]

Definition at line 968 of file AlbPUMI_FMDBDiscretization_Def.hpp.

template<class Output >

void AlbPUMI::FMDBDiscretization< Output >::removeQPStatesFromAPF ( ) [private]

Definition at line 993 of file AlbPUMI_FMDBDiscretization_Def.hpp.

Member Data Documentation

template<class Output >

std::vector<std::string> AlbPUMI::FMDBDiscretization< Output >::solNames [private]

Definition at line 221 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

std::vector<std::string> AlbPUMI::FMDBDiscretization< Output >::resNames [private]

Definition at line 222 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

std::vector<int> AlbPUMI::FMDBDiscretization< Output >::solIndex [private]

Definition at line 223 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::RCP<Teuchos::FancyOStream> AlbPUMI::FMDBDiscretization< Output >::out [private]

Call stk_io for creating exodus output file.

Definition at line 226 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

double AlbPUMI::FMDBDiscretization< Output >::previous_time_label [private]

Definition at line 228 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

TRANSFORMTYPE AlbPUMI::FMDBDiscretization< Output >::transform_type [private]

Definition at line 232 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Output AlbPUMI::FMDBDiscretization< Output >::meshOutput [protected]

Output object.

Definition at line 237 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::RCP<const Epetra_Comm> AlbPUMI::FMDBDiscretization< Output >::comm [protected]

Stk Mesh Objects.

Epetra communicator

Definition at line 242 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::RCP<Epetra_Map> AlbPUMI::FMDBDiscretization< Output >::node_map [protected]

Node map.

Definition at line 245 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::RCP<Epetra_Map> AlbPUMI::FMDBDiscretization< Output >::map [protected]

Unknown Map.

Definition at line 248 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::RCP<Epetra_Map> AlbPUMI::FMDBDiscretization< Output >::overlap_map [protected]

Overlapped unknown map, and node map.

Definition at line 251 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::RCP<Epetra_Map> AlbPUMI::FMDBDiscretization< Output >::overlap_node_map [protected]

Definition at line 252 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::RCP<Epetra_CrsGraph> AlbPUMI::FMDBDiscretization< Output >::graph [protected]

Jacobian matrix graph.

Definition at line 255 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::RCP<Epetra_CrsGraph> AlbPUMI::FMDBDiscretization< Output >::overlap_graph [protected]

Overlapped Jacobian matrix graph.

Definition at line 258 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

const unsigned int AlbPUMI::FMDBDiscretization< Output >::neq [protected]

Number of equations (and unknowns) per node.

Definition at line 261 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Albany::NodeSetList AlbPUMI::FMDBDiscretization< Output >::nodeSets [protected]

node sets stored as std::map(string ID, int vector of GIDs)

Definition at line 264 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Albany::NodeSetCoordList AlbPUMI::FMDBDiscretization< Output >::nodeSetCoords [protected]

Definition at line 265 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

std::vector<Albany::SideSetList> AlbPUMI::FMDBDiscretization< Output >::sideSets [protected]

side sets stored as std::map(string ID, SideArray classes) per workset (std::vector across worksets)

Definition at line 268 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Albany::WorksetArray<Teuchos::ArrayRCP<Teuchos::ArrayRCP<Teuchos::ArrayRCP<int> > > >::type AlbPUMI::FMDBDiscretization< Output >::wsElNodeEqID [protected]

Connectivity array [workset, element, local-node, Eq] => LID.

Definition at line 271 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Albany::WorksetArray<Teuchos::ArrayRCP<Teuchos::ArrayRCP<int> > >::type AlbPUMI::FMDBDiscretization< Output >::wsElNodeID [protected]

Definition at line 273 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Teuchos::ArrayRCP<double> AlbPUMI::FMDBDiscretization< Output >::coordinates [mutable, protected]

Definition at line 275 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >

Albany::WorksetArray<std::string>::type AlbPUMI::FMDBDiscretization< Output >::wsEBNames [protected]

Definition at line 276 of file AlbPUMI_FMDBDiscretization.hpp.

template<class Output >