Ioss_Utils.h

Go to the documentation of this file.

// Copyright(C) 1999-2024 National Technology & Engineering Solutions
// of Sandia, LLC (NTESS).  Under the terms of Contract DE-NA0003525 with
// NTESS, the U.S. Government retains certain rights in this software.
//
// See packages/seacas/LICENSE for details
 
#pragma once
 
#include "Ioss_CodeTypes.h"
#include "Ioss_ElementTopology.h"
#include "Ioss_EntityType.h"
#include "Ioss_Field.h"
#include "Ioss_Property.h"
#include "Ioss_Sort.h"
#include <algorithm> // for sort, lower_bound, copy, etc
#include <cassert>
#include <cmath>
#include <cstddef>   // for size_t
#include <cstdint>   // for int64_t
#include <cstdlib>   // for nullptrr
#include <iostream>  // for ostringstream, etcstream, etc
#include <stdexcept> // for runtime_error
#include <string>    // for string
#include <vector>    // for vector
 
#include "ioss_export.h"
 
namespace Ioss {
  class DatabaseIO;
  class Field;
  class GroupingEntity;
  class Region;
  class SideBlock;
  class PropertyManager;
  enum class ElementShape : unsigned int;
} // namespace Ioss
 
[[noreturn]] inline void IOSS_ERROR(const std::ostringstream &errmsg)
{
  throw std::runtime_error((errmsg).str());
}
 
#ifdef NDEBUG
#define IOSS_ASSERT_USED(x) (void)x
#else
#define IOSS_ASSERT_USED(x)
#endif
 
// We have been relying on the assumption that calling `.data()` on an empty vector
// will return `nullptr`.  However, according to cppreference (based on the standard):
//
// `If size() is 0, data() may or may not return a null pointer.`
//
// We don't have any systems on which we have found that (yet?), but this is proactive
// in removing our use of `.data()` on potentially empty vectors...
template <typename T> IOSS_NODISCARD constexpr T *Data(std::vector<T> &vec)
{
  if (vec.empty()) {
    return nullptr;
  }
  return vec.data();
}
 
template <typename T> IOSS_NODISCARD constexpr const T *Data(const std::vector<T> &vec)
{
  if (vec.empty()) {
    return nullptr;
  }
  return vec.data();
}
 
template <typename T, size_t N> IOSS_NODISCARD constexpr T *Data(std::array<T, N> &arr)
{
  return N == 0 ? nullptr : arr.data();
}
 
template <typename T, size_t N> IOSS_NODISCARD constexpr const T *Data(const std::array<T, N> &arr)
{
  return N == 0 ? nullptr : arr.data();
}
 
namespace Ioss {
  /* \brief Utility methods.
   */
  class IOSS_EXPORT Utils
  {
    static std::ostream
        *m_outputStream; ///< general informational output (very rare). Default std::cerr
    static std::ostream *m_debugStream;   ///< debug output when requested. Default std::cerr
    static std::ostream *m_warningStream; ///< IOSS warning output. Default std::cerr
    static std::string m_preWarningText;  ///< is a string that prepends all warning message output.
                                          ///< Default is "\nIOSS WARNING: "
  public:
    /**
     * \defgroup IossStreams Streams used for IOSS output
     *@{
     */
    /** \brief set the stream for all streams (output, debug, and warning) to the specified
     * `out_stream`
     */
    static void set_all_streams(std::ostream &out_stream);
 
    /** \brief get the debug stream.
     */
    IOSS_NODISCARD static std::ostream &get_debug_stream();
 
    /** \brief get the warning stream.
     */
    IOSS_NODISCARD static std::ostream &get_warning_stream();
 
    /** \brief get the output stream.
     */
    IOSS_NODISCARD static std::ostream &get_output_stream();
 
    IOSS_NODISCARD static std::string &get_warning_text() { return m_preWarningText; }
 
    /** \brief set the output stream to the specified `output_stream`
     */
    static void set_output_stream(std::ostream &output_stream);
 
    /** \brief set the debug stream to the specified `debug_stream`
     */
    static void set_debug_stream(std::ostream &debug_stream);
 
    /** \brief set the warning stream to the specified `warning_stream`
     */
    static void set_warning_stream(std::ostream &warning_stream);
 
    /** \brief set the pre-warning text
     * Sets the text output prior to a warning to the specified text.
     * Pass an empty string to disable this.  Default is `"\nIOSS WARNING: "`
     */
    static void set_pre_warning_text(const std::string &text) { m_preWarningText = text; }
    /** @}*/
 
    static void copyright(std::ostream &out, const std::string &year_range);
 
    static void check_dynamic_cast(const void *ptr)
    {
      if (ptr == nullptr) {
        std::ostringstream errmsg;
        errmsg << "INTERNAL ERROR: Invalid dynamic cast returned nullptr\n";
        IOSS_ERROR(errmsg);
      }
    }
 
    // NOTE: This code previously checked for existence of filesystem include, but
    //       gcc-8.X has the include but needs a library, also intel and clang
    //       pretend to be gcc, so macro to test for usability of filesystem
    //       was complicated and we can easily get by with the following code.
    static bool is_path_absolute(const std::string &path)
    {
      if (!path.empty()) {
#ifdef __IOSS_WINDOWS__
        return path[0] == '\\' && path[1] == ':';
#else
        return path[0] == '/';
#endif
      }
      return false;
    }
 
    /** \brief guess file type from extension */
    IOSS_NODISCARD static std::string get_type_from_file(const std::string &filename);
 
    template <typename T> static void uniquify(std::vector<T> &vec, bool skip_first = false)
    {
      auto it = vec.begin();
      if (skip_first) {
        it++;
      }
      Ioss::sort(it, vec.end());
      vec.resize(unique(vec, skip_first));
      vec.shrink_to_fit();
    }
 
    template <typename T> static void generate_index(std::vector<T> &index)
    {
      T sum = 0;
      for (size_t i = 0; i < index.size() - 1; i++) {
        T cnt    = index[i];
        index[i] = sum;
        sum += cnt;
      }
      index.back() = sum;
    }
 
    template <typename T>
    IOSS_NODISCARD static T find_index_location(T node, const std::vector<T> &index)
    {
      // 0-based node numbering
      // index[p] = first node (0-based) on processor p
 
#if 1
      // Assume data coherence.  I.e., a new search will be close to the
      // previous search.
      static size_t prev = 1;
 
      size_t nproc = index.size();
      if (prev < nproc && index[prev - 1] <= node && index[prev] > node) {
        return prev - 1;
      }
 
      for (size_t p = 1; p < nproc; p++) {
        if (index[p] > node) {
          prev = p;
          return p - 1;
        }
      }
      std::ostringstream errmsg;
      errmsg << "FATAL ERROR: find_index_location. Searching for " << node << " in:\n";
      for (auto idx : index) {
        errmsg << idx << ", ";
      }
      errmsg << "\n";
      IOSS_ERROR(errmsg);
#else
      return std::distance(index.begin(), std::upper_bound(index.begin(), index.end(), node)) - 1;
#endif
    }
 
    static void copy_string(char *dest, char const *source, size_t elements);
 
    static void copy_string(char *dest, const std::string &source, size_t elements)
    {
      copy_string(dest, source.c_str(), elements);
    }
 
    template <size_t size> static void copy_string(char (&output)[size], const std::string &source)
    {
      copy_string(output, source.c_str(), size);
    }
 
    template <size_t size> static void copy_string(char (&output)[size], const char *source)
    {
      // Copy the string don't copy too many bytes.
      copy_string(output, source, size);
    }
 
    template <typename T> static void clear(std::vector<T> &vec)
    {
      vec.clear();
      vec.shrink_to_fit();
      assert(vec.capacity() == 0);
    }
 
    /**
     * Returns the number of digits required to print the number.
     * If `use_commas` is specified, then the width will be adjusted
     * to account for the comma used every 3 digits.
     * (1,234,567,890 would return 13)
     * Typically used with the `fmt::print()` functions as:
     * ```
     * fmt::print("{:{}}", number, number_width(number,true))
     * fmt::print("{:{}d}", number, number_width(number,false))
     * ```
     */
    IOSS_NODISCARD inline static int number_width(const size_t number, bool use_commas = false)
    {
      if (number == 0) {
        return 1;
      }
      int width = static_cast<int>(std::floor(std::log10(number))) + 1;
      if (use_commas) {
        width += ((width - 1) / 3);
      }
      return width;
    }
 
    IOSS_NODISCARD inline static int power_2(int count)
    {
      // Return the power of two which is equal to or greater than `count`
      // count = 15 -> returns 16
      // count = 16 -> returns 16
      // count = 17 -> returns 32
 
      // Use brute force...
      int pow2 = 1;
      while (pow2 < count) {
        pow2 *= 2;
      }
      return pow2;
    }
 
    template <typename T>
    IOSS_NODISCARD static bool check_block_order(IOSS_MAYBE_UNUSED const std::vector<T *> &blocks)
    {
#ifndef NDEBUG
      // Verify that element blocks are defined in sorted offset order...
      typename std::vector<T *>::const_iterator I;
 
      int64_t eb_offset = -1;
      for (I = blocks.begin(); I != blocks.end(); ++I) {
        int64_t this_off = (*I)->get_offset();
        if (this_off < eb_offset) {
          {
            {
              return false;
            }
          }
        }
        eb_offset = this_off;
      }
#endif
      return true;
    }
 
    IOSS_NODISCARD static int term_width();
 
    IOSS_NODISCARD static int log_power_2(uint64_t value);
 
    /** \brief Get formatted time and date strings.
     *
     *  Fill time_string and date_string with current time and date
     *  formatted as "HH:MM:SS" for time and "yy/mm/dd" or "yyyy/mm/dd"
     *  for date.
     *
     *  \param[out] time_string The formatted time string.
     *  \param[out] date_string The formatted date string.
     *  \param[in] length Use 8 for short-year date format, or 10 for long-year date format.
     */
    static void time_and_date(char *time_string, char *date_string, size_t length);
 
    IOSS_NODISCARD static std::string decode_filename(const std::string &filename, int processor,
                                                      int num_processors);
    IOSS_NODISCARD static int         get_number(const std::string &suffix);
    IOSS_NODISCARD static int         extract_id(const std::string &name_id);
    IOSS_NODISCARD static std::string encode_entity_name(const std::string &entity_type,
                                                         int64_t            id);
 
    /** Return the trailing digits (if any) from `name`
     * `hex20` would return the string `20`
     * `tetra` would return an empty string.
     */
    IOSS_NODISCARD static std::string get_trailing_digits(const std::string &name);
 
    /** \brief create a string that describes the list of input `ids` collapsing ranges if possible.
     *
     * Traverse the sorted input vector `ids` and return a string that has all sequential ranges
     * collapsed and separated by `rng_sep` and all individual ids or ranges separated by `seq_sep`.
     * Will throw an exception if `ids` is not sorted.   An empty list returns an empty string.
     * The sequence of ids `1, 2, 3, 5, 6, 7` with `rng_sep=".."` will return the default
     * string `1..3, 5..8`
     */
    IOSS_NODISCARD static std::string format_id_list(const std::vector<size_t> &ids,
                                                     const std::string         &rng_sep = " to ",
                                                     const std::string         &seq_sep = ", ");
 
    /** \brief Convert a string to lower case, and convert spaces to `_`.
     *
     *  The conversion is performed in place.
     *
     *  \param[in,out] name On input, the string to convert. On output, the converted string.
     *
     */
    static void fixup_name(char *name);
 
    /** \brief Convert a string to lower case, and convert spaces to `_`.
     *
     *  The conversion is performed in place.
     *
     *  \param[in,out] name On input, the string to convert. On output, the converted string.
     *
     */
    static void fixup_name(std::string &name);
 
    /** \brief Check whether property `prop_name` exists and if so, set `prop_value`
     *
     * based on the property value.  Either "TRUE", "YES", "ON", or nonzero for true;
     * or "FALSE", "NO", "OFF", or 0 for false.
     * \param[in] properties the Ioss::PropertyManager containing the properties to be checked.
     * \param[in] prop_name the name of the property to check whether it exists and if so, set its
     * value.
     * \param[out] prop_value if `prop_name` exists and has a valid value, set prop_value
     * accordingly. Does not modify if `prop_name` does not exist. \returns true/false depending on
     * whether property found and value set.
     */
 
    static bool check_set_bool_property(const Ioss::PropertyManager &properties,
                                        const std::string &prop_name, bool &prop_value);
 
    /** \brief Determine whether an entity has the property `omitted`.
     *
     *  \param[in] block The entity.
     *  \returns True if the entity has the property `omitted`.
     */
    IOSS_NODISCARD static bool block_is_omitted(Ioss::GroupingEntity *block);
 
    /** \brief Process the base element type `base` which has
     *         `nodes_per_element` nodes and a spatial dimension of `spatial`
     *         into a form that the IO system can (hopefully) recognize.
     *
     *  Lowercases the name; converts spaces to `_`, adds
     *  nodes_per_element at end of name (if not already there), and
     *  does some other transformations to remove some exodusII ambiguity.
     *
     *  \param[in] base The element base name.
     *  \param[in] nodes_per_element The number of nodes per element.
     *  \param[in] spatial The spatial dimension of the element.
     *  \returns The Ioss-formatted element name.
     */
    IOSS_NODISCARD static std::string fixup_type(const std::string &base, int nodes_per_element,
                                                 int spatial);
 
    /** \brief Uppercase the first letter of the string
     *
     *  \param[in] name The string to convert.
     *  \returns The converted string.
     */
    IOSS_NODISCARD static std::string capitalize(std::string name);
 
    /** \brief Convert a string to upper case.
     *
     *  \param[in] name The string to convert.
     *  \returns The converted string.
     */
    IOSS_NODISCARD static std::string uppercase(std::string name);
 
    /** \brief Convert a string to lower case.
     *
     *  \param[in] name The string to convert.
     *  \returns The converted string.
     */
    IOSS_NODISCARD static std::string lowercase(std::string name);
 
    static void check_non_null(void *ptr, const char *type, const std::string &name,
                               const std::string &func);
 
    /** \brief Case-insensitive string comparison.
     *
     *  \param[in] s1 First string
     *  \param[in] s2 Second string
     *  \returns `true` if strings are equal
     */
    IOSS_NODISCARD static bool str_equal(const std::string &s1, const std::string &s2);
 
    /** \brief Case-insensitive substring comparison.
     *
     *  \param[in] prefix The prefix that should start the string
     *  \param[in] str The string which should begin with prefix
     *  \returns `true` if `str` begins with `prefix` or `prefix` is empty
     */
    IOSS_NODISCARD static bool substr_equal(const std::string &prefix, const std::string &str);
 
    /** Check all values in `data` to make sure that if they are converted to a double and
     * back again, there will be no data loss.  This requires that the value be less than 2^53.
     * This is done in the exodus database since it stores all transient data as doubles...
     */
    static bool check_int_to_real_overflow(const Ioss::Field &field, int64_t *data,
                                           size_t num_entity);
 
    /** \brief Get a string containing `uname` output.
     *
     *  This output contains information about the current computing platform.
     *  This is used as information data in the created results file to help
     *  in tracking when/where/... the file was created.
     *
     *  \returns The platform information string.
     */
    IOSS_NODISCARD static std::string platform_information();
 
    /** \brief Get a filename relative to the specified working directory (if any)
     *         of the current execution.
     *
     *  Working_directory must end with `/` or be empty.
     *
     *  \param[in] relative_filename The file path to be appended to the working directory path.
     *  \param[in] type The file type. "generated" file types are treated differently.
     *  \param[in] working_directory the path to which the relative_filename path is appended.
     *  \returns The full path (working_directory + relative_filename)
     */
    IOSS_NODISCARD static std::string local_filename(const std::string &relative_filename,
                                                     const std::string &type,
                                                     const std::string &working_directory);
 
    static void get_fields(int64_t entity_count, Ioss::NameList &names,
                           Ioss::Field::RoleType fld_role, const DatabaseIO *db, int *local_truth,
                           std::vector<Ioss::Field> &fields);
 
    static int field_warning(const Ioss::GroupingEntity *ge, const Ioss::Field &field,
                             const std::string &inout);
 
    static void calculate_sideblock_membership(IntVector &face_is_member, const SideBlock *sb,
                                               size_t int_byte_size, const void *element,
                                               const void *sides, int64_t number_sides,
                                               const Region *region);
 
    /** \brief Get the appropriate index offset for the sides of elements in a SideBlock.
     *
     *  And yet another idiosyncrasy of sidesets...
     *  The side of an element (especially shells) can be
     *  either a face or an edge in the same sideset.  The
     *  ordinal of an edge is (local_edge_number+numfaces) on the
     *  database, but needs to be (local_edge_number) for Sierra...
     *
     *  If the sideblock has a "parent_element_topology" and a
     *  "topology", then we can determine whether to offset the
     *  side ordinals...
     *
     *  \param[in] sb Compute the offset for element sides in this SideBlock
     *  \returns The offset.
     */
    IOSS_NODISCARD static int64_t get_side_offset(const Ioss::ElementTopology *parent_topo,
                                                  const Ioss::ElementTopology *side_topo);
 
    IOSS_NODISCARD static int64_t get_side_offset(const Ioss::SideBlock *sb);
 
    IOSS_NODISCARD static unsigned int hash(const std::string &name);
 
    IOSS_NODISCARD static double timer();
 
    /** \brief Convert an input file to a vector of strings containing one string for each line of
     * the file.
     *
     *  Should only be called by a single processor or each processor will be accessing the file
     *  at the same time...
     *
     *  \param[in] file_name The name of the file.
     *  \param[out] lines The vector of strings containing the lines of the file
     *  \param[in] max_line_length The maximum number of characters in any line of the file.
     */
    static void input_file(const std::string &file_name, Ioss::NameList *lines,
                           size_t max_line_length = 0);
 
    template <class T> IOSS_NODISCARD static std::string to_string(const T &t)
    {
      return std::to_string(t);
    }
 
    //! \brief Tries to shorten long variable names to an acceptable
    //! length, and converts to lowercase and spaces to `_`
    //!
    //! Many databases have a maximum length for variable names which can
    //! cause a problem with variable name length.
    //!
 
    //! This routine tries to shorten long variable names to an
    //! acceptable length (`max_var_len` characters max).  If the name
    //! is already less than this length, it is returned unchanged...
    //!
    //! Since there is a (good) chance that two shortened names will match,
    //! a 2-letter `hash` code is appended to the end of the variable name.
    //!
    //! So, we shorten the name to a maximum of `max_var_len`-3
    //! characters and append a 2 character hash+separator.
    //!
    //! It also converts name to lowercase and converts spaces to `_`
    IOSS_NODISCARD static std::string variable_name_kluge(const std::string &name,
                                                          size_t component_count, size_t copies,
                                                          size_t max_var_len);
 
    IOSS_NODISCARD static std::string shape_to_string(const Ioss::ElementShape &shape);
 
    IOSS_NODISCARD static std::string entity_type_to_string(const Ioss::EntityType &type);
 
    /** \brief Create a nominal mesh for use in history databases.
     *
     *  The model for a history file is a single sphere element (1 node, 1 element).
     *  This is needed for some applications that read this file that require a
     *  "mesh" even though a history file is just a collection of global variables
     *  with no real mesh. This routine will add the mesh portion to a history file.
     *
     *  \param[in,out] region The region on which the nominal mesh is to be defined.
     */
    static void generate_history_mesh(Ioss::Region *region);
 
    static void info_fields(const Ioss::GroupingEntity *ige, Ioss::Field::RoleType role,
                            const std::string &header, const std::string &suffix = "\n\t",
                            bool detail = false);
 
    static void info_property(const Ioss::GroupingEntity *ige, Ioss::Property::Origin origin,
                              const std::string &header, const std::string &suffix = "\n\t",
                              bool print_empty = false);
 
    static void insert_sort_and_unique(const Ioss::NameList &src, Ioss::NameList &dest)
    {
      dest.insert(dest.end(), src.begin(), src.end());
      std::sort(dest.begin(), dest.end(), std::less<>());
      auto endIter = std::unique(dest.begin(), dest.end());
      dest.resize(endIter - dest.begin());
    }
 
  private:
    // SEE: http://lemire.me/blog/2017/04/10/removing-duplicates-from-lists-quickly
    template <typename T> static size_t unique(std::vector<T> &out, bool skip_first)
    {
      if (out.empty()) {
        return 0;
      }
      size_t i    = 1;
      size_t pos  = 1;
      T      oldv = out[0];
      if (skip_first) {
        i    = 2;
        pos  = 2;
        oldv = out[1];
      }
      for (; i < out.size(); ++i) {
        T newv   = out[i];
        out[pos] = newv;
        pos += (newv != oldv);
        oldv = newv;
      }
      return pos;
    }
  };
 
  inline std::ostream &OUTPUT() { return Utils::get_output_stream(); }
 
  inline std::ostream &DebugOut() { return Utils::get_debug_stream(); }
 
  inline std::ostream &WarnOut(bool output_prewarning = true)
  {
    if (output_prewarning) {
      Utils::get_warning_stream() << Utils::get_warning_text();
    }
    return Utils::get_warning_stream();
  }
 
} // namespace Ioss