9#include "ioss_export.h"
25#ifdef SEACAS_HAVE_KOKKOS
26#include <Kokkos_Core.hpp>
167 int64_t optional_value)
const;
169 const std::string &optional_value)
const;
177 void property_update(
const std::string &property, int64_t value)
const;
178 void property_update(
const std::string &property,
const std::string &value)
const;
203 int64_t
get_field_data(
const std::string &field_name,
void *data,
size_t data_size)
const;
205 int64_t
put_field_data(
const std::string &field_name,
void *data,
size_t data_size)
const;
211 int64_t
get_field_data(
const std::string &field_name,
void **data,
size_t *data_size)
const;
216 template <
typename T>
217 int64_t
get_field_data(
const std::string &field_name, std::vector<T> &data)
const;
219 template <
typename T>
220 int64_t
put_field_data(
const std::string &field_name,
const std::vector<T> &data)
const;
221 template <
typename T>
222 int64_t
put_field_data(
const std::string &field_name, std::vector<T> &data)
const;
224#ifdef SEACAS_HAVE_KOKKOS
230 template <
typename T,
typename... Args>
231 int64_t
get_field_data(
const std::string &field_name, Kokkos::View<T *, Args...> &data)
const;
233 template <
typename T,
typename... Args>
234 int64_t
get_field_data(
const std::string &field_name, Kokkos::View<T **, Args...> &data)
const;
236 template <
typename T,
typename... Args>
237 int64_t
put_field_data(
const std::string &field_name, Kokkos::View<T *, Args...> &data)
const;
239 template <
typename T,
typename... Args>
240 int64_t
put_field_data(
const std::string &field_name, Kokkos::View<T **, Args...> &data)
const;
259 int64_t reset_entity_count(int64_t new_entity_count)
const;
267 void count_attributes()
const;
278 void really_delete_database();
293 size_t data_size = 0)
const = 0;
295 size_t data_size = 0)
const = 0;
298 size_t *data_size)
const = 0;
300#if defined(IOSS_THREADSAFE)
301 mutable std::mutex m_;
363 int64_t optional_value)
const
365 return properties.get_optional(property_name, optional_value);
370 const std::string &optional_value)
const
372 return properties.get_optional(property_name, optional_value);
381 return save_entity_count;
447 return fields.exists(field_name);
458 return fields.get(field_name);
469 return fields.getref(field_name);
487 return fields.describe(names);
498 return fields.describe(role);
510 return fields.describe(role, names);
528 std::vector<T> &data)
const
536 size_t data_size = data.size() *
sizeof(T);
556 const std::vector<T> &data)
const
562 size_t data_size = data.size() *
sizeof(T);
565 std::vector<T> nc_data(data);
570 T *my_data =
const_cast<T *
>(
Data(data));
576 std::vector<T> &data)
const
582 size_t data_size = data.size() *
sizeof(T);
583 T *my_data =
const_cast<T *
>(
Data(data));
588#ifdef SEACAS_HAVE_KOKKOS
599template <
typename T,
typename... Args>
601 Kokkos::View<T *, Args...> &data)
const
603 typedef Kokkos::View<T *, Args...> ViewType;
605 verify_field_exists(field_name,
"input");
611 Kokkos::resize(data, new_view_size);
612 size_t data_size = new_view_size *
sizeof(T);
615 typename ViewType::HostMirror host_data = Kokkos::create_mirror_view(data);
618 T *host_data_ptr = host_data.data();
621 auto retval = internal_get_field_data(field, host_data_ptr, data_size);
628 Kokkos::deep_copy(data, host_data);
642template <
typename T,
typename... Args>
644 Kokkos::View<T **, Args...> &data)
const
646 typedef Kokkos::View<T **, Args...> ViewType;
648 verify_field_exists(field_name,
"input");
653 int new_view_size_left = field.
raw_count();
655 Kokkos::resize(data, new_view_size_left, new_view_size_right);
656 size_t data_size = new_view_size_left * new_view_size_right *
sizeof(T);
662 T *data_array =
new T[data_size];
665 typename ViewType::HostMirror host_data = Kokkos::create_mirror_view(data);
668 auto retval = internal_get_field_data(field, data_array, data_size);
680 for (
int i = 0; i < new_view_size_left; ++i) {
681 for (
int j = 0; j < new_view_size_right; ++j) {
682 host_data(i, j) = data_array[new_view_size_right * i + j];
690 Kokkos::deep_copy(data, host_data);
704template <
typename T,
typename... Args>
706 Kokkos::View<T *, Args...> &data)
const
708 typedef Kokkos::View<T *, Args...> ViewType;
710 verify_field_exists(field_name,
"output");
712 Ioss::Field field = get_field(field_name);
716 typename ViewType::HostMirror host_data = Kokkos::create_mirror_view(data);
719 Kokkos::deep_copy(host_data, data);
722 T *host_data_ptr = host_data.data();
728 return internal_put_field_data(field, host_data_ptr, data_size);
740template <
typename T,
typename... Args>
742 Kokkos::View<T **, Args...> &data)
const
744 typedef Kokkos::View<T **, Args...> ViewType;
746 verify_field_exists(field_name,
"output");
748 Ioss::Field field = get_field(field_name);
750 int view_size_left =
data.extent(0);
751 int view_size_right =
data.extent(1);
754 if (view_size_left * view_size_right *
sizeof(T) != data_size) {
755 std::ostringstream errmsg;
756 errmsg <<
"\nERROR: View dimensions are inconsistent with field raw count or raw storage "
758 <<
"for field" << field_name <<
"\n\n";
763 typename ViewType::HostMirror host_data = Kokkos::create_mirror_view(data);
766 Kokkos::deep_copy(host_data, data);
780 for (
int i = 0; i < view_size_left; ++i) {
781 for (
int j = 0; j < view_size_right; ++j) {
782 data_array[view_size_right * i + j] = host_data(i, j);
790 auto retval = internal_put_field_data(field, data_array, data_size);
#define IOSS_NODISCARD
Definition Ioss_CodeTypes.h:56
IOSS_NODISCARD constexpr T * Data(std::vector< T > &vec)
Definition Ioss_Utils.h:66
void IOSS_ERROR(const std::string &errmsg)
Definition Ioss_Utils.h:38
void put_field_data(std::string field_name, int local_size, size_t component_count, Entity *e)
Definition Ut_ioad.C:276
An input or output Database.
Definition Ioss_DatabaseIO.h:63
A collection of Ioss::Field objects.
Definition Ioss_FieldManager.h:35
Holds metadata for bulk data associated with a GroupingEntity.
Definition Ioss_Field.h:28
IOSS_NODISCARD const VariableType * raw_storage() const
Definition Ioss_Field.h:171
IOSS_NODISCARD bool has_transform() const
Definition Ioss_Field.h:223
BasicType
The basic data type held in the field.
Definition Ioss_Field.h:32
@ INT64
Definition Ioss_Field.h:38
@ INT32
Definition Ioss_Field.h:37
IOSS_NODISCARD size_t raw_count() const
Definition Ioss_Field.h:174
RoleType
Definition Ioss_Field.h:72
bool transform(void *data)
Definition Ioss_Field.C:312
void check_type(BasicType the_type) const
Definition Ioss_Field.C:204
static IOSS_NODISCARD Ioss::Field::BasicType get_field_type(char)
Definition Ioss_Field.h:46
Base class for all 'grouping' entities. The following derived classes are typical:
Definition Ioss_GroupingEntity.h:67
virtual IOSS_NODISCARD std::string short_type_string() const =0
Get a short name of the particular type of entity.
IOSS_NODISCARD bool equal_(const GroupingEntity &rhs, bool quiet) const
Definition Ioss_GroupingEntity.C:377
void field_add(Field new_field)
Add a field to the entity's field manager.
Definition Ioss_GroupingEntity.C:202
virtual int64_t internal_get_field_data(const Field &field, void *data, size_t data_size=0) const =0
int64_t attributeCount
Definition Ioss_GroupingEntity.h:314
IOSS_NODISCARD Ioss::Field::BasicType field_int_type() const
Definition Ioss_GroupingEntity.h:247
virtual IOSS_NODISCARD EntityType type() const =0
Get the EntityType, which indicates the particular type of GroupingEntity this is.
FieldManager fields
Definition Ioss_GroupingEntity.h:290
virtual IOSS_NODISCARD std::string type_string() const =0
Get the name of the particular type of entity.
IOSS_NODISCARD int64_t get_optional_property(const std::string &property, int64_t optional_value) const
Definition Ioss_GroupingEntity.h:362
IOSS_NODISCARD DatabaseIO * get_database() const
Definition Ioss_GroupingEntity.C:95
IOSS_NODISCARD NameList property_describe() const
Get the names of all properties in the property manager for this entity.
Definition Ioss_GroupingEntity.h:388
friend class Property
Definition Ioss_GroupingEntity.h:69
IOSS_NODISCARD Property get_property(const std::string &property_name) const
Get the Property from the property manager associated with the entity.
Definition Ioss_GroupingEntity.h:357
IOSS_NODISCARD int64_t entity_count() const
Definition Ioss_GroupingEntity.h:375
GroupingEntity & operator=(const GroupingEntity &rhs)=delete
int64_t get_field_data(const std::string &field_name, void *data, size_t data_size) const
Read field data from the database file into memory using a pointer.
Definition Ioss_GroupingEntity.C:242
IOSS_NODISCARD Field get_field(const std::string &field_name) const
Get a field from the entity's field manager.
Definition Ioss_GroupingEntity.h:456
IOSS_NODISCARD bool field_exists(const std::string &field_name) const
Checks if a field with a given name exists in the entity's field manager.
Definition Ioss_GroupingEntity.h:445
std::string entityName
Definition Ioss_GroupingEntity.h:309
int64_t reset_entity_count(int64_t new_entity_count) const
Definition Ioss_GroupingEntity.h:377
IOSS_NODISCARD unsigned int hash() const
Definition Ioss_GroupingEntity.h:256
void verify_field_exists(const std::string &field_name, const std::string &inout) const
Definition Ioss_GroupingEntity.C:335
void reset_database(DatabaseIO *io_database)
Definition Ioss_GroupingEntity.C:108
virtual void delete_database()
Definition Ioss_GroupingEntity.C:67
IOSS_NODISCARD State get_state() const
Get the current Ioss::State of the entity.
Definition Ioss_GroupingEntity.C:131
virtual int64_t internal_put_field_data(const Field &field, void *data, size_t data_size=0) const =0
void field_erase(const std::string &field_name)
Remove a field from the entity's field manager.
Definition Ioss_GroupingEntity.h:434
int field_describe(NameList *names) const
Get the names of all fields in the entity's field manager.
Definition Ioss_GroupingEntity.h:485
PropertyManager properties
Definition Ioss_GroupingEntity.h:289
int64_t put_field_data(const std::string &field_name, void *data, size_t data_size) const
Write field data from memory into the database file using a pointer.
Definition Ioss_GroupingEntity.C:290
IOSS_NODISCARD const Field & get_fieldref(const std::string &field_name) const
Get a reference to a field from the entity's field manager.
Definition Ioss_GroupingEntity.h:467
IOSS_NODISCARD const std::string & name() const
Get name of entity.
Definition Ioss_GroupingEntity.h:100
bool set_state(State new_state)
Definition Ioss_GroupingEntity.h:269
void property_update(const std::string &property, int64_t value) const
Definition Ioss_GroupingEntity.C:346
void property_add(const Property &new_prop)
Add a property to the entity's property manager.
Definition Ioss_GroupingEntity.h:324
IOSS_NODISCARD bool check_for_duplicate(const Ioss::Field &new_field) const
Definition Ioss_GroupingEntity.C:162
DatabaseIO * database_
Definition Ioss_GroupingEntity.h:311
void property_erase(const std::string &property_name)
Remove a property from the entity's property manager.
Definition Ioss_GroupingEntity.h:336
IOSS_NODISCARD size_t property_count() const
Get the number of properties defined in the property manager for this entity.
Definition Ioss_GroupingEntity.h:418
int64_t entityCount
Definition Ioss_GroupingEntity.h:313
unsigned int hash_
Definition Ioss_GroupingEntity.h:316
virtual void block_membership(Ioss::NameList &)
Get list of blocks that the entities in this GroupingEntity "touch".
Definition Ioss_GroupingEntity.h:131
IOSS_NODISCARD size_t field_count() const
Get the number of fields in the entity's field manager.
Definition Ioss_GroupingEntity.h:517
virtual IOSS_NODISCARD const GroupingEntity * contained_in() const
Definition Ioss_GroupingEntity.C:75
virtual IOSS_NODISCARD std::string contains_string() const =0
What does this entity contain.
void set_database(DatabaseIO *io_database)
Definition Ioss_GroupingEntity.C:101
State entityState
Definition Ioss_GroupingEntity.h:315
void set_name(const std::string &new_name)
Set the name of the entity.
Definition Ioss_GroupingEntity.h:106
IOSS_NODISCARD bool property_exists(const std::string &property_name) const
Checks if a property exists in the entity's property manager.
Definition Ioss_GroupingEntity.h:346
virtual int64_t internal_get_zc_field_data(const Field &field, void **data, size_t *data_size) const =0
IOSS_NODISCARD NameList field_describe() const
Get the names of all fields in the entity's field manager.
Definition Ioss_GroupingEntity.h:477
A collection of Ioss::Property objects.
Definition Ioss_PropertyManager.h:36
A named value that has a known type.
Definition Ioss_Property.h:27
Origin
Definition Ioss_Property.h:30
IOSS_NODISCARD int component_count() const
Definition Ioss_VariableType.h:154
size_t data_size(const Ioss::Field &f)
Definition Iofaodel_FieldSerialization.C:17
The main namespace for the Ioss library.
Definition Ioad_DatabaseIO.C:40
State
Access states for a database.
Definition Ioss_State.h:15
@ STATE_CLOSED
Definition Ioss_State.h:22
Ioss::NameList NameList
Definition Ioss_ChangeSetFactory.h:25
EntityType
The particular type of GroupingEntity.
Definition Ioss_EntityType.h:12
std::vector< char > data
Definition cth_pressure_map.C:46