| accRatio_ | MCMC | private |
| addCurrentState() | MCMC | protected |
| appendMAP() | MCMC | |
| chainDim_ | MCMC | private |
| chaindimInit_ | MCMC | private |
| chcov | MCMC | private |
| currState_ | MCMC | private |
| evalLogPosterior(Array1D< double > &m) | MCMC | |
| fcnAccept_ | MCMC | private |
| fcnAcceptFlag_ | MCMC | private |
| fcnReject_ | MCMC | private |
| fcnRejectFlag_ | MCMC | private |
| FLAG | MCMC | private |
| fullChain_ | MCMC | private |
| getAcceptRatio(double *accrat) | MCMC | |
| getAcceptRatio() | MCMC | |
| GetChainDim() const | MCMC | |
| getChainPropCov(Array2D< double > &propcov) | MCMC | |
| getCurrentStatePost() | MCMC | |
| getCurrentStateState(Array1D< double > &state) | MCMC | |
| getDimInit() | MCMC | |
| getFcnAccept(void(*fcnAccept)(void *)) | MCMC | |
| getFcnAcceptInit() | MCMC | |
| getFcnReject(void(*fcnReject)(void *)) | MCMC | |
| getFcnRejectInit() | MCMC | |
| getFileFreq() | MCMC | |
| getFilename() | MCMC | |
| getFullChain(Array1D< chainstate > &readchain) | MCMC | |
| getFullChainSize() | MCMC | |
| getLastWrite() | MCMC | |
| getLower(int i) | MCMC | |
| getLowerFlag(int i) | MCMC | |
| getMode(Array1D< double > &MAPparams) | MCMC | |
| getModeStatePost() | MCMC | |
| getModeStateState(Array1D< double > &state) | MCMC | |
| getNamesPrepended() | MCMC | |
| getNSubSteps() | MCMC | inlinevirtual |
| getOutputInit() | MCMC | |
| getOutputType() | MCMC | |
| getPostInfo(void *post) | MCMC | |
| getPropCovInit() | MCMC | |
| getSamples(int burnin, int every, Array2D< double > &samples) | MCMC | |
| getSamples(Array2D< double > &samples) | MCMC | |
| getScreenFreq() | MCMC | |
| getSeed() | MCMC | |
| getUpper(int i) | MCMC | |
| getUpperFlag(int i) | MCMC | |
| getWriteFlag() | MCMC | |
| inDomain(Array1D< double > &m) | MCMC | |
| initChainPropCov(Array2D< double > &propcov) | MCMC | |
| initChainPropCovDiag(Array1D< double > &sig) | MCMC | |
| L_ | MCMC | private |
| lastwrite_ | MCMC | private |
| logPosterior_ | MCMC | private |
| Lower_ | MCMC | private |
| lower_flag_ | MCMC | private |
| MCMC(double(*logposterior)(Array1D< double > &, void *), void *postinfo) | MCMC | |
| MCMC(LogPosteriorBase &L) | MCMC | |
| MCMC() | MCMC | |
| methodInit_ | MCMC | private |
| modeState_ | MCMC | private |
| namesPrepend | MCMC | private |
| namesPrepended() | MCMC | |
| newMode_ | MCMC | private |
| newModeFound() | MCMC | |
| outputinfo_ | MCMC | private |
| outputInit_ | MCMC | private |
| parseBinChain(string filename, Array1D< chainstate > &readchain) | MCMC | |
| postInfo_ | MCMC | private |
| probOldNew(Array1D< double > &a, Array1D< double > &b) | MCMC | inlineprivatevirtual |
| propcovInit_ | MCMC | private |
| RandomState | MCMC | protected |
| resetChainFilename(string filename) | MCMC | |
| resetChainState() | MCMC | |
| runAcceptFcn() | MCMC | |
| runChain(int ncalls, Array1D< double > &chstart)=0 | MCMC | pure virtual |
| runChain(int ncalls)=0 | MCMC | pure virtual |
| runOptim(Array1D< double > &start) | MCMC | virtual |
| runRejectFcn() | MCMC | |
| seed_ | MCMC | private |
| setAcceptRatio(double d) | MCMC | protected |
| setChainDim(int chdim) | MCMC | |
| setCurrentStateAlfa(double newAlfa) | MCMC | |
| setCurrentStatePost(double newPost) | MCMC | |
| setCurrentStateState(Array1D< double > &newState) | MCMC | |
| setCurrentStateStep(int i) | MCMC | |
| setDefaultDomain() | MCMC | |
| setFcnAccept(void(*fcnAccept)(void *)) | MCMC | |
| setFcnReject(void(*fcnReject)(void *)) | MCMC | |
| setLastWrite(int i) | MCMC | protected |
| setLower(double lower, int i) | MCMC | |
| setNewMode(bool value) | MCMC | |
| setOutputInfo(string outtype, string file, int freq_file, int freq_screen) | MCMC | |
| setPostInfo(void *postinfo) | MCMC | |
| setSeed(int seed) | MCMC | |
| setUpper(double upper, int i) | MCMC | |
| setWriteFlag(int I) | MCMC | |
| updateMode() | MCMC | protected |
| Upper_ | MCMC | private |
| upper_flag_ | MCMC | private |
| WRITE_FLAG | MCMC | private |
| writeChainBin(string filename) | MCMC | |
| writeChainTxt(string filename) | MCMC | |
| writeFullChainTxt(string filename, Array1D< chainstate > fullchain) | MCMC | |
1.12.0