Database
Database.build_ATLAS_db
Database.build_kbase_db
Database.build_KEGG_db
Database.build_metacyc_db
Database.build_MINE_db
Database.build_modelseed
Database.build_SPRESI_db
Database.build_user_rxns_db
Database.initialize_database
Database.query
Database.remove_duplicate_cpds
FBA
FBA.build_model
FBA.compare_results
FBA.compareKO_results
FBA.optimize_target
FBA.retrieve_producable_mets
Parser
Parser.compute_tanimoto
Parser.generate_output
Parser.read_targets
Parser.structure_similarity
ShortestPath
ShortestPath.constraints
ShortestPath.extractinfo
ShortestPath.integerprogram_pulp
Visualization_chemdraw
Visualization_chemdraw.cdxml_editor
Visualization_chemdraw.cdxml_elements
Visualization_chemdraw.exclude_cpds
Visualization_chemdraw.reaction_files
Visualization_graphviz
Visualization_graphviz.chempyutilgraph_edit
Visualization_graphviz.reaction_files
Visualization_graphviz.SP_Graph_dot